| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3651292 | 11 (0.100) | 109 (1.040) | 64/94 | 0.0 | 91.8% | pseudogene (2/746 nt) | yhiS | putative uncharacterized protein YhiS |
| ? | NC_000913 | 3653715 = | 9 (0.090) | intergenic (+2/‑246) | yhiS/slp | putative uncharacterized protein YhiS/starvation lipoprotein | |||||
Only 100 of 133 total aligned reads displayed.
TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT > NC_000913/3651243‑3651341 | tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:3616958‑M1/50‑1 (MQ=255)tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:1592254‑M1/50‑1 (MQ=255)tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:1755290‑M1/50‑1 (MQ=255) ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATg > 1:88412/1‑50 (MQ=255) ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATg > 2:2640117/1‑50 (MQ=255) cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa < 1:2615876‑M1/49‑2 (MQ=255) aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt < 2:2597317‑M1/50‑4 (MQ=255) aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattg < 2:2096112‑M1/50‑5 (MQ=255) aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt > 1:2209835‑M1/1‑46 (MQ=255) tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga > 1:3286439‑M1/1‑45 (MQ=255) tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga < 1:5065651‑M1/50‑6 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat < 1:4679176‑M1/49‑7 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 2:3894618‑M1/1‑43 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat < 2:4723701‑M1/49‑7 (MQ=255) aaaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAAtt < 2:1821972/49‑1 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta < 1:1560548‑M1/49‑9 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta < 2:3196585‑M1/49‑9 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGa > 2:1070659/1‑50 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 2:2526947‑M1/1‑40 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 2:4211825‑M1/1‑40 (MQ=255) cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta < 1:3391953‑M1/50‑12 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag < 2:2832834‑M1/50‑13 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag < 1:535808‑M1/50‑13 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag > 1:2154598‑M1/1‑38 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag < 2:520661‑M1/50‑13 (MQ=255) tCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag > 2:2807453‑M1/1‑37 (MQ=255) cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca > 1:458762‑M1/1‑36 (MQ=255) ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac > 2:5145144‑M1/1‑35 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact < 2:1535671‑M1/49‑17 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact < 1:1342483‑M1/49‑17 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact < 1:400948‑M1/49‑17 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca < 1:2001657‑M1/47‑15 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca < 1:5139711‑M1/47‑15 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcgctt < 1:4207869‑M1/49‑18 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt < 1:740486‑M1/50‑19 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt < 1:3150139‑M1/50‑19 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt < 1:5188698‑M1/50‑19 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt < 1:2496595‑M1/49‑18 (MQ=255) cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta < 2:1912743‑M1/50‑20 (MQ=255) cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta > 1:497707‑M1/1‑31 (MQ=255) aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat < 1:4401819‑M1/50‑21 (MQ=255) aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat < 2:1445248‑M1/50‑21 (MQ=255) aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta > 2:5356561‑M1/1‑30 (MQ=255) tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttata < 2:3799902‑M1/50‑22 (MQ=255) tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttata < 1:3126158‑M1/50‑22 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat < 1:2489706‑M1/50‑24 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat < 2:1329318‑M1/50‑24 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat < 2:4733784‑M1/50‑24 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat < 1:3451988‑M1/50‑24 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat < 2:4998619‑M1/50‑24 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa < 2:5161194‑M1/49‑23 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa < 1:793219‑M1/49‑23 (MQ=255) aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc < 1:705335‑M1/50‑25 (MQ=255) aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc < 2:5056072‑M1/50‑25 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 2:3692312‑M1/50‑26 (MQ=255) cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat < 2:4467431‑M1/50‑27 (MQ=255) cAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTataa < 2:2086581/50‑1 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt < 1:1604670‑M1/50‑28 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt > 1:4069886‑M1/1‑23 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt > 1:3588488‑M1/1‑23 (MQ=255) aaaTGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTataa > 2:4372992/1‑49 (MQ=255) aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg < 2:4982918‑M1/50‑29 (MQ=255) atgatgAATAAGGAATTTTATattgattattagcactttataatcattga < 1:3067564‑M1/50‑30 (MQ=255) atgatgAATAAGGAATTTTATattgattattagcactttataatcattg > 2:1835158‑M1/1‑21 (MQ=255) atgatgAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTAtaataa < 2:583561/50‑1 (MQ=255) tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa < 1:2790936‑M1/50‑31 (MQ=255) tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa > 2:3314487‑M1/1‑20 (MQ=255) tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa < 2:3222944‑M1/50‑31 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaata < 1:5258431‑M1/50‑33 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaata < 1:3041818‑M1/50‑33 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaata < 2:3467090‑M1/50‑33 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaata < 2:135782‑M1/50‑33 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaat < 1:2275345‑M1/49‑32 (MQ=255) atgaATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATaataaat < 1:666227/49‑1 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 1:68929‑M1/50‑34 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 2:3957199‑M1/50‑34 (MQ=255) gaATAAGGAATTTTATattgattattagcactttataatcattgaataa > 2:3426217‑M1/1‑16 (MQ=255) aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:3012912‑M1/1‑14 (MQ=255) aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa < 1:1717113‑M1/50‑37 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat < 1:2761178‑M1/50‑38 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaa > 2:4603917‑M1/1‑13 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaatag < 2:5350143‑M1/50‑40 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaata < 1:1467908‑M1/49‑39 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:4129018‑M1/1‑11 (MQ=255) ggAATTTTATattgattattagcactttataatcattgaataaaaataga < 2:482309‑M1/50‑41 (MQ=255) gAATTTTATattgattattagcactttataatcattgaataaaaatagat < 2:3166099‑M1/50‑42 (MQ=255) gAATTTTATattgattattagcactttataatcattgaataaaaatagat > 1:3647641‑M1/1‑9 (MQ=255) aaTTTTATattgattattagcactttataatcattgaataaaaatagatt < 2:285049‑M1/50‑43 (MQ=255) aaTTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACgg < 2:3549295/50‑1 (MQ=255) aTTTTATattgattattagcactttataatcattgaataaaaatagattt > 1:2980559‑M1/1‑7 (MQ=255) ttttATattgattattagcactttataatcattgaataaaaatagatttt < 1:1544166‑M1/50‑45 (MQ=255) ttATattgattattagcactttataatcattgaataaaaatagattttat > 2:2278519‑M1/1‑4 (MQ=255) ttATattgattattagcactttataatcattgaataaaaatagatttta < 2:3670971‑M1/49‑46 (MQ=255) tatattgattattagcactttataatcattgaataaaaatagattttat < 1:4808867‑M1/49‑47 (MQ=255) atattgattattagcactttataatcattgaataaaaatagattttatg > 2:3984406‑M1/1‑2 (MQ=255) atattgattattagcactttataatcattgaataaaaatagattttatg > 1:2096849‑M1/1‑2 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:1374244‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 2:3836600‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:4923738‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 2:1644776‑M1/50‑50 (MQ=255) | TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT > NC_000913/3651243‑3651341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |