| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 127 (1.160) | 67/98 | 0.0 | 89.4% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 15 (0.140) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 143 total aligned reads displayed.
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCA > NC_000913/882704‑882802 | gCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTAt > 2:3343796/1‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:4565322‑M2/2‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:677569‑M2/2‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:1171072‑M2/49‑50 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 2:566051‑M2/4‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 1:2202151‑M2/4‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg > 1:1549574‑M2/46‑48 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg > 1:932505‑M2/46‑48 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg > 1:4271963‑M2/45‑50 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:1128790‑M2/7‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:3869284‑M2/43‑49 (MQ=255) cGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGa < 1:3936110/50‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 2:1945712‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:2570281‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 2:1661510‑M2/9‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:2229955‑M2/41‑50 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 2:3345481‑M2/10‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:1777013‑M2/41‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:4054397‑M2/40‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:2030621‑M2/40‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 2:1466139‑M2/40‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 2:378039‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:4510995‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:1575544‑M2/39‑50 (MQ=255) acgctggtagttttttgctagccggataaggcaccgctTTGAAGCGAGcc < 1:5382000‑M2/12‑1 (MQ=255) ctTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCg > 1:2535589/1‑50 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg < 1:4510245‑M2/13‑1 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg < 1:1084387‑M2/13‑1 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg > 1:776579‑M2/38‑50 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg > 2:1952600‑M2/38‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 2:1505427‑M2/37‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt < 1:5189911‑M2/15‑1 (MQ=255) gcgACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTc < 2:2805160/49‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:3160955‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:3955558‑M2/33‑50 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 2:3635000‑M2/17‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:1647123‑M2/17‑1 (MQ=255) gACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCaa > 1:2636351/1‑49 (MQ=255) agttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta > 1:643454‑M2/31‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta < 1:4721665‑M2/20‑1 (MQ=255) cGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtac > 1:5036974/1‑50 (MQ=255) tgtTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtacta > 1:2157542/1‑50 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:2725322‑M2/23‑1 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 2:1301260‑M2/26‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 2:1467457‑M2/25‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:4900245‑M2/25‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac < 2:3585691‑M2/26‑1 (MQ=255) tCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACt > 2:3541578/1‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt > 2:5314163‑M2/23‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 2:4605781‑M2/27‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:295187‑M2/28‑1 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 2:4608596‑M2/21‑50 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 2:2229251‑M2/21‑50 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:1685574‑M2/20‑49 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:2077279‑M2/20‑49 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:441545‑M2/30‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 2:4281400‑M2/20‑49 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttttt < 2:890323‑M2/31‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:2072845‑M2/32‑1 (MQ=255) aTCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:3473393/50‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:1252357‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 2:3202990‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 1:1049280‑M2/35‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 1:3416939‑M2/35‑1 (MQ=255) cccTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 2:2647810/1‑48 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga < 2:2860255‑M2/37‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:3282511‑M2/14‑48 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:5347363‑M2/14‑48 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:583713‑M2/38‑1 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:4379515‑M2/12‑46 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:455909‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:3686259‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 2:2960207‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 2:2510426‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:4904672‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 2:1709352‑M2/40‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATGCTTCACTTTTTAGCAGAGATc < 2:5107295‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt > 2:4402825‑M2/10‑49 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 2:1678238‑M2/41‑1 (MQ=255) aaTAGTTATTGAAGCGAGCCGCTCAATACTTCACTTTTTAGCAGAGATc < 2:2367509/49‑1 (MQ=255) aaTAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:3681707/50‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg > 2:3953459‑M2/8‑50 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 2:4208602‑M2/43‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:5283504‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt < 2:3184591‑M2/44‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 2:2671954‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt < 2:1355927‑M2/44‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 2:1080982‑M2/7‑50 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:910267‑M2/46‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:776878‑M2/46‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTATTTAGCAGAGATCAGTCa < 2:3724913‑M2/46‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 2:4979383‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 2:918111‑M2/4‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 2:4567356‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 2:319899‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:3076404‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 2:1492936‑M2/47‑1 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg < 1:2406474‑M2/48‑1 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:4693636‑M2/2‑49 (MQ=255) ttGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCa > 2:2937954/1‑50 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCA > NC_000913/882704‑882802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |