| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 82 (0.700) | 45 (0.470) | 34/80 | 0.4 | 39.2% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 73 (0.770) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:1595469/1‑49CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:1811670/1‑49 TTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 2:2673984/1‑48 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:2083926/1‑47 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 2:1129154/1‑49 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 2:920520/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 2:2668516/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:564246/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAA < 2:2064351/48‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAA < 1:2548477/48‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAA < 2:3217522/48‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGA < 1:593734/47‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 2:3864460/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 2:112871/49‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 2:3807909/49‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 2:2949899/1‑48 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 2:566823/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:1569065/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 2:2628912/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 2:3425157/50‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 2:3423375/50‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 1:4310855/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 2:1582482/1‑50 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:3803395/1‑50 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG > 1:3561665/1‑48 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG > 2:1863629/1‑47 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACA < 2:4146475/50‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACA < 1:4460330/50‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACA < 1:2537929/50‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:3469093/1‑48 TGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG < 1:3109852/50‑1 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGC < 1:3028354/49‑1 TCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:751739/1‑50 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGC < 2:2925550/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGC < 2:1571639/49‑1 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG < 1:2190478/50‑1 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG < 2:3251735/50‑1 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG > 2:1209733/1‑50 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 1:3170753/50‑1 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC > 2:2999790/1‑50 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 2:2040232/1‑50 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT < 2:3921759/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 2:2809217/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:946745/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:4523459/1‑49 TTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG > 2:1040428/1‑49 CAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC > 1:176961/1‑50 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 2:3560163/50‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 2:277906/50‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 2:2254601/1‑50 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 1:4503475/1‑50 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 2:38496/50‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 2:914203/1‑50 GGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:2396231/1‑50 GTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:2092023/1‑49 TTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:4177704/1‑48 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 2:1733713/50‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGA < 1:2274156/49‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG < 2:3667147/50‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC < 2:347665/49‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 2:3633070/1‑50 TAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:3394918/1‑49 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:1316750/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 2:1465244/49‑1 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCC < 1:1096861/48‑1 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCC < 1:2483001/48‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG < 1:2467389/50‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG < 1:2600403/50‑1 AAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA < 1:738714/50‑1 AGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAA < 2:182668/50‑1 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA < 1:3343192/50‑1 TGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTA < 2:2811423/50‑1 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:1261888/1‑50 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 2:449481/1‑50 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG < 1:1694441/49‑1 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 2:1420956/1‑49 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 2:690973/1‑49 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA < 1:4350878/50‑1 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA < 1:1973253/50‑1 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 2:2058412/1‑50 GAAGAACAGCCGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC > 1:518239/1‑50 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC < 2:3905164/50‑1 AAGAACAGTAGCAGCGTGAACTAGCAGAGCGCCAGGAAAAAATTAGCACC > 2:2845397/1‑50 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 2:2299162/1‑50 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 1:3333150/50‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 2:2900026/50‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 2:798438/50‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 1:1933157/50‑1 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 1:1943144/50‑1 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 2:3583081/50‑1 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG > 1:4191087/1‑50 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG > 2:2514924/1‑50 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:1775682/50‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < 1:1475667/50‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < 2:405751/50‑1 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |