| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 82 (0.700) | 45 (0.470) | 34/80 | 0.4 | 39.2% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 73 (0.770) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
Only 100 of 153 total aligned reads displayed.
AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798315‑2798413 | gccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgt < 2:405751‑M1/1‑1 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt > 2:2514924‑M1/49‑50 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt < 1:1775682‑M1/2‑1 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc > 1:4191087‑M1/48‑50 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc < 1:1943144‑M1/3‑1 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc < 2:3583081‑M1/3‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct < 2:798438‑M1/4‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct < 2:2900026‑M1/4‑1 (MQ=255) ggtgctaattttttcctggcgctctgctagttcacgctgctactgttctt > 2:2845397‑M1/46‑50 (MQ=255) ggtgctaattttttcctggcgctctgccagttcacgctgctgctgttctt > 2:2299162‑M1/46‑50 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct < 1:1973253‑M1/7‑1 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct < 1:4350878‑M1/7‑1 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc > 1:1261888‑M1/42‑50 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttctt > 2:1420956‑M1/42‑49 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttctt > 2:690973‑M1/42‑49 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcttc < 1:288992/50‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt < 2:3824014/49‑1 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCa > 1:1010022/1‑50 (MQ=255) taattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa < 2:2811423‑M1/10‑1 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCAc > 2:3401935/1‑50 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCAc > 1:2885279/1‑50 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACg > 2:4142438/1‑50 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACg > 1:1120912/1‑50 (MQ=255) ttttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGt < 1:3343192‑M1/13‑1 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGt > 1:2796066/1‑50 (MQ=255) ttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct < 2:182668‑M1/15‑1 (MQ=255) tCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc < 1:491750/49‑1 (MQ=255) ttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt < 1:738714‑M1/17‑1 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttc > 1:4037312/1‑50 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttct > 1:1070692/1‑50 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:2600403‑M1/19‑1 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:2467389‑M1/19‑1 (MQ=255) ctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt > 1:1316750‑M1/31‑50 (MQ=255) cgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttctt > 1:2061077/1‑49 (MQ=255) ggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 1:1096861‑M1/20‑1 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttctt > 1:527563/1‑48 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa > 1:3394918‑M1/28‑49 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg > 2:3633070‑M1/28‑50 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg > 1:1561305/1‑50 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 2:3543163/50‑1 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:4085833/50‑1 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg > 1:442447/1‑50 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 2:3162164/1‑50 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 2:2114811/1‑50 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:3098054/1‑50 (MQ=255) cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 2:3667147‑M1/24‑1 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 2:347665‑M1/24‑1 (MQ=255) ctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:4495658/1‑49 (MQ=255) ctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:3866672/1‑49 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTGCTTTAGt < 2:612085/48‑1 (MQ=255) ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 2:1733713‑M1/26‑1 (MQ=255) tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:2274156‑M1/26‑1 (MQ=255) gCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa > 2:3106520/1‑49 (MQ=255) gCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa > 2:113009/1‑49 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAggg < 1:2675558/47‑3 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGAc > 1:1639601/1‑49 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACa < 2:2726702/50‑1 (MQ=255) aGTTCTCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:651941/50‑1 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc > 1:4158660/1‑50 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc > 2:178069/1‑50 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:4177704‑M1/20‑48 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:2396231‑M1/20‑50 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAc > 1:2092023‑M1/20‑49 (MQ=255) ttCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 2:160943/1‑50 (MQ=255) ttCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 2:4325980/1‑50 (MQ=255) agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 2:38496‑M1/33‑1 (MQ=255) agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:4503475‑M1/18‑50 (MQ=255) gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg > 1:176961‑M1/17‑50 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 2:2171580/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTGCACGTCTTTCTTTAGTGACAACCCTg < 2:2265857/49‑1 (MQ=255) cGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 1:2491452/50‑1 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 2:1561651/1‑50 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa > 2:1040428‑M1/14‑49 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 2:2809217‑M1/37‑1 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:946745‑M1/37‑1 (MQ=255) ctgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt < 2:2696208/50‑1 (MQ=255) ctgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 1:2333193/1‑50 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt < 2:3921759‑M1/38‑1 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 2:2040232‑M1/13‑50 (MQ=255) tgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:3511045/1‑50 (MQ=255) gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 1:3170753‑M1/40‑1 (MQ=255) ctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt < 1:2190478‑M1/41‑1 (MQ=255) tgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACTCTGAATTTTTc > 1:468506/1‑50 (MQ=255) tgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 2:3462661/1‑50 (MQ=255) gctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 2:2925550‑M1/42‑1 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:2765909/48‑1 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:3652168/48‑1 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa < 2:436581/50‑1 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 2:1171461/1‑50 (MQ=255) gctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 1:3028354‑M1/45‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACTACCAAGAATTTTACGAGc < 2:4241171/49‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 2:2874600/48‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGc < 2:4241146/49‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGc < 1:3176293/49‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCa > 2:1447519/1‑50 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCa < 2:1496000/50‑1 (MQ=255) tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:2537929‑M1/48‑1 (MQ=255) tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 2:4146475‑M1/48‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt > 1:3803395‑M1/1‑50 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt > 2:1582482‑M1/1‑50 (MQ=255) | AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798315‑2798413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |