| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 82 (0.700) | 45 (0.470) | 34/80 | 0.4 | 39.2% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 73 (0.770) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
Only 100 of 147 total aligned reads displayed.
AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG > NC_000913/2798311‑2798408 | agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:504444/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg < 2:513657/50‑1 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 2:2012093/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:1511148/1‑50 (MQ=255) ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt > 2:2514924‑M2/1‑48 (MQ=255) cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc < 1:1943144‑M2/50‑4 (MQ=255) cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc < 2:3583081‑M2/50‑4 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct < 2:798438‑M2/50‑5 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct < 1:1933157‑M2/50‑5 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct < 2:2900026‑M2/50‑5 (MQ=255) ggTGCTAATTTTTTCCTGGCGCTCTGCTAGTTCACGCTGCTACTGttctt > 2:2845397‑M2/1‑45 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 2:3905164‑M2/50‑7 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCGGCTGttcttc > 1:518239‑M2/1‑44 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct > 2:2058412‑M2/1‑43 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct < 1:4350878‑M2/50‑8 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttc > 1:1261888‑M2/1‑41 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttc > 2:449481‑M2/1‑41 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttctt < 1:1694441‑M2/49‑9 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttctt > 2:1420956‑M2/1‑41 (MQ=255) tAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttct > 1:2295142/1‑50 (MQ=255) tAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttca < 2:2811423‑M2/50‑11 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt < 2:3824014/49‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 2:2569867/1‑49 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt < 2:2290575/49‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:728741/1‑49 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgt < 1:3343192‑M2/50‑14 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCa > 1:1010022/1‑50 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCa < 1:4177683/50‑1 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCAc > 1:2885279/1‑50 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCAc > 2:3401935/1‑50 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtct < 2:182668‑M2/50‑16 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCAc < 1:297386/49‑1 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACg > 2:4142438/1‑50 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACg > 1:1120912/1‑50 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtcttt < 1:738714‑M2/50‑18 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct < 1:2600403‑M2/50‑20 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt > 2:4318282/1‑50 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtct < 2:3685336/49‑1 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt > 1:1316750‑M2/1‑30 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 2:1465244‑M2/49‑21 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 1:2483001‑M2/48‑21 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 1:1096861‑M2/48‑21 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttct > 1:1070692/1‑50 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttag > 2:3633070‑M2/1‑27 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttta > 1:3394918‑M2/1‑27 (MQ=255) cgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttctt > 1:2061077/1‑49 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt < 2:347665‑M2/49‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttctt > 1:2569229/1‑48 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga < 2:1733713‑M2/50‑27 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg > 1:1561305/1‑50 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 2:3543163/50‑1 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:4085833/50‑1 (MQ=255) tctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga < 1:2274156‑M2/49‑27 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 2:2114811/1‑50 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 2:3162164/1‑50 (MQ=255) ctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:4495658/1‑49 (MQ=255) ctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:3866672/1‑49 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt < 2:4210249/48‑1 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt < 1:4065947/48‑1 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTGCTTTAGt < 2:612085/48‑1 (MQ=255) gCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa > 2:3106520/1‑49 (MQ=255) gCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa > 2:113009/1‑49 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaacc > 1:2396231‑M2/1‑19 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa > 1:4177704‑M2/1‑19 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa < 1:235982/48‑1 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACa < 2:2726702/50‑1 (MQ=255) cAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:3856761/1‑50 (MQ=255) aGTTCTCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:651941/50‑1 (MQ=255) aGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccct < 2:277906‑M2/50‑34 (MQ=255) aGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccct > 2:2254601‑M2/1‑17 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc > 2:178069/1‑50 (MQ=255) gTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctg > 1:176961‑M2/1‑16 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc < 1:2060145/50‑1 (MQ=255) ttCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 2:160943/1‑50 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat < 1:946745‑M2/50‑38 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaa > 2:1040428‑M2/1‑13 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:1082752/1‑49 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt < 2:3921759‑M2/50‑39 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat > 1:4523459‑M2/1‑12 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTGCACGTCTTTCTTTAGTGACAACCCTg < 2:2265857/49‑1 (MQ=255) cGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 1:4219107/50‑1 (MQ=255) cGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 1:2491452/50‑1 (MQ=255) gctgctgctGttcttcttcacgtctttctttagtgacaaccctgaatttt < 1:3170753‑M2/50‑41 (MQ=255) ctgctgctgttcttcttcacgtctttctttagtgacaaccctgaattttt < 1:2190478‑M2/50‑42 (MQ=255) tgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:3511045/1‑50 (MQ=255) gctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc < 2:2925550‑M2/49‑43 (MQ=255) gctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc < 2:1571639‑M2/49‑43 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt > 1:2880060/1‑50 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 2:4110462/49‑1 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt < 2:797711/48‑1 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttctt < 2:3609641/50‑1 (MQ=255) tgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACTCTGAATTTTTc > 1:468506/1‑50 (MQ=255) tgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 2:3462661/1‑50 (MQ=255) gctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag < 1:3028354‑M2/49‑46 (MQ=255) ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagca < 1:3109852‑M2/50‑48 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:2765909/48‑1 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa < 2:436581/50‑1 (MQ=255) tgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcat < 1:4460330‑M2/50‑49 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 2:1171461/1‑50 (MQ=255) gTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:2735894/1‑49 (MQ=255) | AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG > NC_000913/2798311‑2798408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |