| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 54 (0.460) | 51 (0.470) | 38/92 | 0.5 | 46.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 69 (0.630) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 AAACGGCGTAATGACCCTTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:2303491/1‑50AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 2:1734459/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 2:2158153/49‑1 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:2004551/1‑50 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 2:1902006/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:3017903/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 2:1456251/1‑49 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:3656897/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 2:3051572/50‑1 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC < 2:4019227/50‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 2:1593763/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:828048/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:2961137/1‑50 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 2:4097288/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG > 1:1257130/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG < 1:3401686/50‑1 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1511932/1‑47 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGA < 1:633670/49‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:3682823/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:4213900/49‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCG < 1:60043/50‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:4198544/1‑49 TTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 2:809602/1‑50 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 2:3865694/1‑49 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:1193382/1‑49 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA < 1:378787/49‑1 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:2071420/1‑49 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA < 1:226405/49‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT < 2:3624543/50‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 2:2572882/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT < 2:1329931/50‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1658600/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC < 1:1915634/50‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:2349296/1‑50 TCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 2:2835505/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 2:1607807/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:3020861/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA < 2:3930527/50‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA < 2:249250/50‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 2:3177421/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 2:765270/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 2:3033461/1‑50 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:2338513/49‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 2:2302289/1‑49 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:3251108/1‑48 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1093852/1‑48 TTACCAAACAGCACCGATCATCAGGCGGCGAGAGGCGACATCTCCACGCA < 1:2810062/50‑1 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 2:2500534/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 2:2414033/50‑1 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:284933/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC < 2:3491683/50‑1 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:2882160/1‑50 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG > 2:1796002/1‑50 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG > 1:1785999/1‑50 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:3120683/1‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 2:1363284/50‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:3516189/1‑49 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 2:926499/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCGGTGCGCGACGCG < 2:1532417/47‑1 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 2:997108/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 2:2322486/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 2:3129247/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC < 1:2436160/48‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA < 2:4298913/50‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:142753/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:3337884/1‑49 ATCATCCGGCGGCGAGAGGCAACATCTCCACGCAGTGCGCGACGCGCAAA < 1:4411618/50‑1 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |