| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 54 (0.460) | 51 (0.470) | 38/92 | 0.5 | 46.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 69 (0.630) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 133 total aligned reads displayed.
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | ttGCCATAACGGCGGGCAATTTTTTCCACCAGACGCCAGTTACTCTCGat > 2:2881251/1‑50 (MQ=38)ttGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGat < 1:4092431/50‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:3017903‑M2/49‑49 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 2:1456251‑M2/49‑49 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca > 1:3656897‑M2/48‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat < 2:3051572‑M2/4‑1 (MQ=255) ccATAACGGCGGGCAATTTTTTCCACCAGACGCAAGTTACTCTCGatcat > 1:440154/1‑50 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 1:1160485/50‑1 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 2:1583059/50‑1 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 2:1876184/50‑1 (MQ=255) cATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcatc < 2:1712944/50‑1 (MQ=255) aTAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATcc < 1:4158753/50‑1 (MQ=255) aTAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATcc < 2:492020/50‑1 (MQ=255) tAACGGCGGGGACTTTTTTCCACCAGACGCCAGTTACTCTCGATCCTCcg > 2:3181096/1‑50 (MQ=25) aaCGGCGGGCAATTTTTACCCCCAAACGCAAGGTACTCTCGCTCATCcgg > 2:1654312/1‑50 (MQ=255) aCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggc < 2:4070349/50‑1 (MQ=255) aCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggc < 1:2402047/50‑1 (MQ=255) aCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggc < 2:881333/50‑1 (MQ=255) aCGGCGGACAATTTTTACCACCAAGCGCAAGTTTCTCTCGATCATCcggc < 2:93179/50‑1 (MQ=37) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 2:4097288‑M2/41‑50 (MQ=255) cggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGgcggcg < 1:595168/50‑1 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1511932‑M2/36‑47 (MQ=255) ggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCggcggc > 1:2415250/1‑47 (MQ=255) gCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCgaga < 2:4120681/50‑1 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgaga < 1:633670‑M2/16‑1 (MQ=255) cAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGagag < 1:871655/50‑1 (MQ=255) cAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGagag > 1:1845060/1‑50 (MQ=255) aaTTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg < 2:3560757/50‑1 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:4198544‑M2/31‑49 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:1193382‑M2/29‑49 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:2071420‑M2/29‑49 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa < 1:226405‑M2/21‑1 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 2:3865694‑M2/29‑49 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa < 1:378787‑M2/21‑1 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 2:2572882‑M2/27‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt < 2:3624543‑M2/24‑1 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc < 1:1915634‑M2/25‑1 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:1658600‑M2/26‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:2349296‑M2/26‑50 (MQ=255) ccaccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtct > 1:1023020/1‑50 (MQ=255) ccaccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtct < 2:1494605/50‑1 (MQ=255) ccaccaGACGCAAGTTACTCGCGATCATCCGGCGGCGAGAGGCGACAtct < 1:631954/50‑1 (MQ=255) caccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 1:3492950/1‑50 (MQ=255) caccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 2:2615218/1‑50 (MQ=255) caccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 1:84172/1‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 2:1607807‑M2/23‑49 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:3020861‑M2/23‑49 (MQ=255) accaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 2:2382509/1‑49 (MQ=255) accaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTcc < 1:2502208/50‑1 (MQ=255) accaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTcc < 2:1444996/50‑1 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 2:3177421‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa < 2:3930527‑M2/29‑1 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa < 2:249250‑M2/29‑1 (MQ=255) ccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCa < 1:3851336/50‑1 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc > 2:765270‑M2/21‑50 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc > 2:3033461‑M2/21‑50 (MQ=255) caGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCAc > 2:2627130/1‑50 (MQ=255) aGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg > 2:433714/1‑50 (MQ=255) aGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2623154/1‑50 (MQ=255) gACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:3367400/1‑49 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1093852‑M2/18‑48 (MQ=255) ttaccaaacagcaccgaTCATCAGGCGGCGAGAGGCGACATCTCCACGCa < 1:2810062‑M2/33‑1 (MQ=255) aCGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:3974809/1‑48 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 2:2500534‑M2/17‑50 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 2:3840940/50‑1 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 2:2761866/1‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 2:2414033‑M2/36‑1 (MQ=255) cAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 2:471444/50‑1 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:2189074/50‑1 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:1939424/50‑1 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:1745663/1‑50 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:3985772/50‑1 (MQ=255) aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 2:4401956/1‑50 (MQ=255) gTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:1678288/1‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc < 2:3491683‑M2/39‑1 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:284933‑M2/12‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:2882160‑M2/12‑50 (MQ=255) ttACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:3372562/1‑49 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:672520/1‑50 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 2:4356701/1‑50 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 2:4566431/1‑50 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg > 2:1796002‑M2/8‑50 (MQ=255) ctctCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg > 1:1585348/1‑50 (MQ=255) ctctCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg > 2:3209073/1‑50 (MQ=255) ctctCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 2:1154903/49‑1 (MQ=255) tctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 2:2238853/1‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:3120683‑M2/7‑50 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg < 2:1363284‑M2/45‑1 (MQ=255) tcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 2:4414739/1‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:3516189‑M2/4‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 2:926499‑M2/4‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCGGTGCGCGAcgcg < 2:1532417‑M2/45‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc < 1:2436160‑M2/46‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 2:2322486‑M2/3‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaa < 2:4298913‑M2/49‑1 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:142753‑M2/2‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:3337884‑M2/2‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCAACATCTCCACGCAGTGCGCGACGCGCaaa < 1:4411618‑M2/49‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:3955758/50‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 1:3693322/1‑50 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |