| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 54 (0.460) | 51 (0.470) | 38/92 | 0.5 | 46.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 69 (0.630) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 119 total aligned reads displayed.
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:2004551‑M1/1‑50 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 1:3017903‑M1/1‑48 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 2:1456251‑M1/1‑48 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAca < 1:3987431/50‑1 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:3656897‑M1/1‑47 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat < 2:3051572‑M1/50‑5 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagc > 2:117643/1‑50 (MQ=255) gTAATGGCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagcc < 1:574343/50‑1 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc < 2:4019227‑M1/50‑6 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagc > 1:2960839/1‑48 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagc > 1:4551459/1‑48 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccag > 2:3697589/1‑50 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 2:1593763‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccag < 2:2544942/49‑1 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:828048‑M1/1‑41 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:2961137‑M1/1‑41 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 2:4097288‑M1/1‑40 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcgg < 1:3401686‑M1/50‑12 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcgg > 1:1257130‑M1/1‑39 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAgccagcca < 2:835538/49‑1 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAc < 1:4344616/50‑1 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAc < 2:1308257/50‑1 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAc < 2:192618/50‑1 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAc > 1:3006041/1‑50 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAcc < 2:2303051/50‑1 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAccc > 2:894193/1‑50 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAAAGCCAGCCACCCt < 2:3652055/50‑1 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1511932‑M1/1‑35 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgaga < 1:633670‑M1/49‑17 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:3682823‑M1/1‑32 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGttt < 1:4375748/50‑1 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg < 1:3379651/50‑1 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 2:1139924/1‑50 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcg < 1:60043‑M1/50‑21 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:4198544‑M1/1‑30 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 2:368920/1‑49 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 1:2089255/1‑49 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 2:809602‑M1/1‑29 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 2:3085419/1‑48 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 2:3865694‑M1/1‑28 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:1193382‑M1/1‑28 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga < 1:226405‑M1/49‑22 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga < 1:378787‑M1/49‑22 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgta < 2:3166989/49‑1 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat > 2:2572882‑M1/1‑26 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat < 2:1329931‑M1/50‑25 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat < 2:3624543‑M1/50‑25 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagt < 1:466611/49‑1 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc < 1:1915634‑M1/50‑26 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:2349296‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta > 1:2169597/1‑49 (MQ=255) ttCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta > 1:2499267/1‑48 (MQ=255) ttCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTaaa < 2:1661561/50‑1 (MQ=255) tcgtcgTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta > 1:2740651/1‑47 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:3020861‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 2:1607807‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAg < 2:1680855/49‑1 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 2:3177421‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca < 2:3930527‑M1/50‑30 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca < 2:249250‑M1/50‑30 (MQ=255) gtcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGa < 2:1075641/49‑1 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 2:3033461‑M1/1‑20 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 2:765270‑M1/1‑20 (MQ=255) tcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGaaa < 2:1937625/50‑1 (MQ=255) cgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAAc > 2:4030859/1‑50 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg < 1:2338513‑M1/49‑32 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 2:2302289‑M1/1‑18 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1093852‑M1/1‑17 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:3251108‑M1/1‑17 (MQ=255) ttACCAAACAGCACCGAtcatcaggcggcgagaggcgacatctccacgca < 1:2810062‑M1/50‑34 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 2:2500534‑M1/1‑16 (MQ=255) tACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTc > 1:3146851/1‑49 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 2:2414033‑M1/50‑37 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTccac < 2:3293750/50‑1 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTcca < 1:2769913/49‑1 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTcca < 2:3989195/49‑1 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTcca < 2:3315688/49‑1 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTcca < 2:2998535/49‑1 (MQ=255) cAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTccac > 2:102649/1‑49 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc < 2:3491683‑M1/50‑40 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:284933‑M1/1‑11 (MQ=255) aaCAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCcaccac > 1:2583871/1‑50 (MQ=255) aaCAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCcaccac > 2:2904612/1‑50 (MQ=255) aCAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACt < 1:1874278/50‑1 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg > 1:1785999‑M1/1‑7 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg > 2:1796002‑M1/1‑7 (MQ=255) gCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTcc > 1:1057745/1‑50 (MQ=255) cACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCg < 2:1787512/50‑1 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg < 2:1363284‑M1/50‑46 (MQ=255) aCCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCgg < 2:1167889/50‑1 (MQ=255) aCCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCgg > 1:619596/1‑50 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc > 2:926499‑M1/1‑3 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcggtgcgcgacgcg < 2:1532417‑M1/47‑46 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 2:2322486‑M1/1‑2 (MQ=255) gACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAg < 1:1736372/50‑1 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaa < 2:4298913‑M1/50‑50 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:3337884‑M1/1‑1 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:142753‑M1/1‑1 (MQ=255) atcatccggcggcgagaggcaacatctccacgcagtgcgcgacgcgcaaa < 1:4411618‑M1/50‑50 (MQ=255) aCAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAgg < 1:4396003/50‑1 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |