| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 31 (0.270) | 42 (0.360) | 33/98 | 0.9 | 57.9% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 30 (0.260) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593250‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > NC_000913/3593309‑3593357 ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAC > 1:4002163/1‑50 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC > 1:2068976/1‑50 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCC > 1:1533013/1‑50 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC > 2:3344408/1‑50 TTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCG > 2:3887213/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC < 1:2062369/50‑1 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCC < 2:129701/49‑1 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:982444/1‑50 CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGT > 2:3578912/1‑50 CGCTGGTGGCACGCGGATCGCCGCATAACGCGCCGAGCACCCCGCCCCGT > 2:3439183/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 1:309145/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 2:4549848/1‑50 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 2:4126067/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 2:3536501/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC > 2:2831450/1‑50 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCG > 1:4265608/1‑50 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG < 2:4256252/48‑1 GCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCC > 1:2324774/1‑49 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT < 1:4445930/50‑1 CGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATC < 1:2558959/50‑1 CGCGGATCCCCGCATAACGTGCCGCGCACCCCGCCCCGTTCGCGCCAAT > 2:2012332/1‑49 GCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:1695538/1‑48 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC < 1:696309/50‑1 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:2201010/1‑50 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC < 1:1543799/50‑1 GATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCG < 2:4564758/50‑1 GATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCG < 1:3000528/50‑1 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGAC > 2:2007712/1‑49 ctCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:3498659/3‑50 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 2:2589656/1‑50 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 2:3330930/1‑50 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT < 2:3477796/50‑1 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC < 2:2056612/50‑1 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC < 2:4247330/50‑1 ttCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT > 1:1204028/3‑50 GCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT > 1:3865086/1‑49 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGA < 1:714137/50‑1 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGA > 1:2511337/1‑50 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTG < 2:3586041/49‑1 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT > 1:940561/1‑50 AGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT > 1:2458360/1‑49 ACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > 1:3045283/1‑50 ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593250‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > NC_000913/3593309‑3593357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |