| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 31 (0.270) | 42 (0.360) | 33/98 | 0.9 | 57.9% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 30 (0.260) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATAT > NC_000913/3593260‑3593358 | cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc < 1:131480/50‑1 (MQ=255)cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc < 2:2427810/50‑1 (MQ=255)cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc < 1:2276586/50‑1 (MQ=255)cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 2:876361/1‑50 (MQ=255)acaattcgcccgctggtggcacgcggatcgccgcataacgtgccgagcac > 1:4002163‑M2/50‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc > 1:590438/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc < 1:2970496/50‑1 (MQ=255) caattcgcccgctggtggcacgcggatcgccgcataacgtgccgagcacc > 1:2068976‑M2/49‑50 (MQ=255) aattcgcccgctggtggcacgcggatcgccgcataacgtgccgagcaccc > 1:1533013‑M2/48‑50 (MQ=255) attcgcccgctggtggcacgcggatcgccgcataacgtgccgagcacccc > 2:3344408‑M2/47‑50 (MQ=255) ttcgcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccg > 2:3887213‑M2/46‑50 (MQ=255) tggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcc > 1:1455856/1‑50 (MQ=255) gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc < 1:2062369‑M2/8‑1 (MQ=255) gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgcc < 2:129701‑M2/7‑1 (MQ=255) ccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccccg > 1:982444‑M2/41‑50 (MQ=255) cACGCGGATCGCCGCATAACGTGCCGAGCAAGGGGGTTTCccccgccccg < 2:4059838/50‑1 (MQ=39) cgctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGt > 2:3578912‑M2/40‑50 (MQ=255) cgctggtggcacgcggatcgccgcataacgcgccgagcaCCCCGCCCCGt > 2:3439183‑M2/40‑50 (MQ=255) gctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGtt > 2:4549848‑M2/39‑50 (MQ=255) gctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGtt > 1:309145‑M2/39‑50 (MQ=255) ctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTc < 2:4126067‑M2/13‑1 (MQ=255) ctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTc < 2:3536501‑M2/13‑1 (MQ=255) ctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTc > 2:2831450‑M2/38‑50 (MQ=255) gtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTcgcg > 1:4265608‑M2/35‑50 (MQ=255) gtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTcg < 2:4256252‑M2/14‑1 (MQ=255) gATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg > 2:3139861/1‑50 (MQ=255) gcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGcc > 1:2324774‑M2/32‑49 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 1:2352783/1‑50 (MQ=255) acgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAAt < 1:4445930‑M2/21‑1 (MQ=255) cgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATc < 1:2558959‑M2/22‑1 (MQ=255) cgcggatccccgcataacgtgccgcgcaCCCCGCCCCGTTCGCGCCAAt > 2:2012332‑M2/29‑49 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:1643393/1‑49 (MQ=255) gcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAAt > 1:1695538‑M2/28‑48 (MQ=255) cATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAg < 2:2275064/50‑1 (MQ=255) ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc < 1:1543799‑M2/25‑1 (MQ=255) ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc < 1:696309‑M2/25‑1 (MQ=255) ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc > 1:2201010‑M2/26‑50 (MQ=255) aaaaCGTGCCGAGCAAGGGGGTTTTCCCCGCCCCGTTCGCGCCAATCAGc < 1:2839095/48‑1 (MQ=39) aTAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGc > 2:2117374/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 1:3106255/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 1:2565865/1‑50 (MQ=255) gatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCg < 1:3000528‑M2/26‑1 (MQ=255) gatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCg < 2:4564758‑M2/26‑1 (MQ=255) aaCGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGt > 1:387428/1‑50 (MQ=255) gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:3676205/1‑49 (MQ=255) tGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc > 2:4361031/1‑49 (MQ=255) ccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGAc > 2:2007712‑M2/20‑49 (MQ=255) ctcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 1:3498659‑M2/19‑50 (MQ=255) cgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 2:2589656‑M2/19‑50 (MQ=255) cgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 2:3330930‑M2/19‑50 (MQ=255) gcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAt < 2:3477796‑M2/33‑1 (MQ=255) cataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc < 2:2056612‑M2/34‑1 (MQ=255) cataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc < 2:4247330‑M2/34‑1 (MQ=255) gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct > 1:1146241/1‑50 (MQ=255) aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc > 2:2134609/1‑50 (MQ=255) aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc < 1:4112134/50‑1 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 2:911341/1‑50 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 1:296534/1‑50 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 1:1913425/1‑50 (MQ=255) aGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGccc > 2:2851521/1‑50 (MQ=255) ttccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCt > 1:1204028‑M2/10‑50 (MQ=255) gtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCt > 1:1963848/1‑49 (MQ=255) gccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCt > 1:3865086‑M2/9‑49 (MQ=255) ccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtga < 1:714137‑M2/43‑1 (MQ=255) ccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtga > 1:2511337‑M2/8‑50 (MQ=255) ccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtg < 2:3586041‑M2/42‑1 (MQ=255) gtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgat < 2:4400842/49‑1 (MQ=255) gagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt > 1:940561‑M2/6‑50 (MQ=255) ttttCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt > 1:975966/1‑49 (MQ=255) ttttCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt > 1:4324716/1‑49 (MQ=255) agcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt > 1:2458360‑M2/5‑49 (MQ=255) aCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGata > 1:3045283‑M2/2‑50 (MQ=255) ccccgccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGatat < 2:1762775/50‑1 (MQ=255) | CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATAT > NC_000913/3593260‑3593358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |