| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 31 (0.270) | 42 (0.360) | 33/98 | 0.9 | 57.9% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 30 (0.260) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > NC_000913/3593249‑3593347 | cacaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCa > 2:608456/1‑50 (MQ=255) acaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAc > 1:4002163‑M1/1‑49 (MQ=255) caATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcc > 1:2068976‑M1/1‑48 (MQ=255) aaTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccc > 1:1533013‑M1/1‑47 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcccc > 2:3344408‑M1/1‑46 (MQ=255) ttCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccg > 2:3887213‑M1/1‑45 (MQ=255) tCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg > 2:556208/1‑50 (MQ=255) cGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtggt > 1:1188460/1‑50 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTTCCGAACAAggtggt < 2:4417787/49‑1 (MQ=39) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc < 1:2062369‑M1/50‑9 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgcc < 2:129701‑M1/49‑8 (MQ=255) cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGttt < 2:4498410/50‑1 (MQ=255) cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGCGGttt > 2:2727329/1‑50 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccg > 1:982444‑M1/1‑40 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtttt < 2:3592933/50‑1 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgt > 2:3578912‑M1/1‑39 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 2:876361/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc < 1:2276586/50‑1 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc < 2:2427810/50‑1 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc < 1:131480/50‑1 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGCGCCGAGCAccccgccccgt > 2:3439183‑M1/1‑39 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgtt > 1:309145‑M1/1‑38 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgtt > 2:4549848‑M1/1‑38 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc > 1:590438/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc < 1:2970496/50‑1 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttc < 2:4126067‑M1/50‑14 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttc < 2:3536501‑M1/50‑14 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttc > 2:2831450‑M1/1‑37 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcg > 1:4265608‑M1/1‑34 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg < 2:4256252‑M1/48‑15 (MQ=255) tggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcc > 1:1455856/1‑50 (MQ=255) gCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgcc > 1:2324774‑M1/1‑31 (MQ=255) cACGCGGATCGCCGCATAACGTGCCGAGCAAGGGGGTTTCccccgccccg < 2:4059838/50‑1 (MQ=39) aCGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaat < 1:4445930‑M1/50‑22 (MQ=255) cgcgGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatc < 1:2558959‑M1/50‑23 (MQ=255) cgcgGATCCCCGCATAACGTGCCGCGCAccccgccccgttcgcgccaat > 2:2012332‑M1/1‑28 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaat > 1:1695538‑M1/1‑27 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc > 1:2201010‑M1/1‑25 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc < 1:1543799‑M1/50‑26 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc < 1:696309‑M1/50‑26 (MQ=255) gATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcg < 1:3000528‑M1/50‑27 (MQ=255) gATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcg < 2:4564758‑M1/50‑27 (MQ=255) gATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg > 2:3139861/1‑50 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 1:2352783/1‑50 (MQ=255) ccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgac > 2:2007712‑M1/1‑19 (MQ=255) ctcatAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaa > 1:3498659‑M1/3‑18 (MQ=255) cgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaa > 2:2589656‑M1/1‑18 (MQ=255) cgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaa > 2:3330930‑M1/1‑18 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:1643393/1‑49 (MQ=255) gcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaat < 2:3477796‑M1/50‑34 (MQ=255) cATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatc < 2:2056612‑M1/50‑35 (MQ=255) cATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatc < 2:4247330‑M1/50‑35 (MQ=255) cATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAg < 2:2275064/50‑1 (MQ=255) aaaaCGTGCCGAGCAAGGGGGTTTTCCCCGCCCCGTTCGCGCCAATCAGc < 1:2839095/48‑1 (MQ=39) aTAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGc > 2:2117374/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 1:2565865/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 1:3106255/1‑50 (MQ=255) aaCGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGt > 1:387428/1‑50 (MQ=255) gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:3676205/1‑49 (MQ=255) ttccgaGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccct > 1:1204028‑M1/3‑9 (MQ=255) tGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc > 2:4361031/1‑49 (MQ=255) gCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccct > 1:3865086‑M1/1‑8 (MQ=255) ccGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctga < 1:714137‑M1/50‑44 (MQ=255) ccGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctga > 1:2511337‑M1/1‑7 (MQ=255) ccGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctg < 2:3586041‑M1/49‑43 (MQ=255) gAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgatt > 1:940561‑M1/1‑5 (MQ=255) gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct > 1:1146241/1‑50 (MQ=255) aGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgatt > 1:2458360‑M1/1‑4 (MQ=255) aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc > 2:2134609/1‑50 (MQ=255) aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc < 1:4112134/50‑1 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 1:296534/1‑50 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 1:1913425/1‑50 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 2:911341/1‑50 (MQ=255) accccgccccgttcgcgccaatcagcgtgacaatctcgccctgattgata > 1:3045283‑M1/1‑1 (MQ=255) | CACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > NC_000913/3593249‑3593347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |