| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 63 (0.540) | 108 (0.970) | 64/94 | 0.0 | 64.0% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 61 (0.550) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 120 total aligned reads displayed.
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:1042522/49‑1CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 2:1961696/49‑1CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:271108/49‑1CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:175219/49‑1 AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG < 1:4422355/50‑1 AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:3826442/1‑50 AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG < 2:606894/50‑1 AGAATCGAAAGGTTCAAAGTACAAAGAAGCATATAAGGAAAAGAGAGAA < 2:3932446/49‑1 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:3389077/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 2:3561477/50‑1 TCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC < 2:2068330/50‑1 TCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC < 1:49808/50‑1 CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 2:2196826/1‑49 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 2:1137125/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 2:3905978/1‑50 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:22009/50‑1 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT > 1:4549638/1‑50 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT > 2:713732/1‑50 AAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:4207819/50‑1 AAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 2:2899821/1‑50 AAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 2:3983161/50‑1 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:1478008/50‑1 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 2:3190549/1‑49 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:4077195/1‑50 TCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 2:1256066/1‑49 TCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 2:3790255/1‑49 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 2:2667418/1‑49 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:627214/50‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:2034887/1‑48 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:1166837/1‑48 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 2:1621342/1‑48 AAGTACAAATACGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 2:2875154/1‑47 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:2846892/50‑1 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT < 2:514482/50‑1 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT < 2:725088/50‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 2:3643921/1‑50 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:2523839/50‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:1344396/1‑50 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:2730502/1‑50 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 2:1328858/50‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:1728581/50‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:2646099/50‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:785736/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:2829693/50‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC < 2:3001517/49‑1 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT > 1:3035494/1‑50 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT < 2:1849549/50‑1 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC < 2:1210515/50‑1 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC > 2:2893804/1‑50 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:984465/1‑50 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:1449534/1‑50 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 2:3819793/1‑49 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 2:3932286/1‑49 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 2:2054453/1‑49 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT < 2:1773339/49‑1 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT < 1:4230756/49‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 2:1309035/1‑49 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 2:2718517/1‑49 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:2219710/1‑50 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:2192041/1‑50 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 2:2556823/50‑1 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:4077115/1‑50 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC > 2:1615708/1‑50 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC < 1:732686/50‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG < 1:2929445/50‑1 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:2367288/1‑49 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 2:3849375/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 2:2366289/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA < 2:405307/50‑1 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:1159489/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 2:1610006/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:3030928/1‑50 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC > 2:1278566/1‑50 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 2:3910660/50‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:2555584/50‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT > 2:3387790/1‑50 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC > 2:4415895/1‑50 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC < 2:3569324/50‑1 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:1604786/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:354766/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:131969/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:2842850/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:3161533/1‑50 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG < 1:805159/50‑1 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:2053259/1‑49 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:946976/1‑49 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGA < 1:1995824/50‑1 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:687272/1‑50 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA < 2:3978467/50‑1 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA < 1:2314177/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 2:1063812/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:2541617/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 2:1703908/50‑1 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG < 1:2299147/50‑1 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:2171424/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 2:111434/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:4082230/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 2:1933058/1‑50 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 2:2943509/50‑1 AGGGGCAATCTTTACAAGATCCGTTCCTGAACACACGGCGTCGGGAACGT < 1:2505857/50‑1 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |