| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 63 (0.540) | 108 (0.970) | 64/94 | 0.0 | 64.0% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 61 (0.550) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 179 total aligned reads displayed.
AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400240‑4400337 | aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg > 1:3826442‑M1/1‑49 (MQ=255)aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg < 1:4422355‑M1/50‑2 (MQ=255)aGAATCGAAAGGTTCAAAGTACAAAGAAGCATATAAGGAAAAGAGAGAA < 2:3932446‑M1/49‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATg < 1:2654626/50‑1 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATgg < 2:883673/50‑1 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc < 1:49808‑M1/50‑6 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc < 2:2068330‑M1/50‑6 (MQ=255) gcGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt < 2:2266938/49‑1 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc > 2:2196826‑M1/1‑44 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 2:4031262/1‑49 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 2:3139408/1‑48 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 1:4350637/1‑48 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTa < 1:758505/49‑1 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat < 1:22009‑M1/50‑9 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc > 2:2899821‑M1/1‑41 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc < 1:4207819‑M1/50‑10 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt > 2:3190549‑M1/1‑38 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgggg > 1:1863624/1‑49 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 2:1059754/1‑49 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 1:729356/1‑49 (MQ=255) tCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCaa > 2:1968880/1‑50 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 2:2667418‑M1/1‑35 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt > 1:2091886/1‑50 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt > 1:3429910/1‑50 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:1166837‑M1/1‑34 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:2034887‑M1/1‑34 (MQ=255) aaGTACAAATACGCATATAAGGAAAAGAGAGAAggggcaatctttac > 2:2875154‑M1/1‑33 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaag < 1:2846892‑M1/50‑18 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCt > 1:2236353/1‑50 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCt < 1:2637238/50‑1 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagat < 2:725088‑M1/50‑20 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagat < 2:514482‑M1/50‑20 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc > 1:1344396‑M1/1‑30 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc < 2:3751957‑M1/50‑21 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc < 1:1728581‑M1/50‑21 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc > 1:2730502‑M1/1‑30 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:838332/1‑50 (MQ=255) tACAAATAAGCATACAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 2:3427010/1‑50 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg > 2:1180795‑M1/1‑28 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc < 2:3001517‑M1/49‑22 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgt > 1:623515‑M1/1‑27 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgt > 1:3035494‑M1/1‑27 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt < 2:1849549‑M1/50‑25 (MQ=255) aTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttc < 2:1210515‑M1/50‑26 (MQ=255) aaGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct > 1:1449534‑M1/1‑23 (MQ=255) aaGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct > 1:984465‑M1/1‑23 (MQ=255) aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct > 2:3819793‑M1/1‑22 (MQ=255) aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct < 2:1773339‑M1/49‑28 (MQ=255) aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct > 2:3932286‑M1/1‑22 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc > 1:3385496/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc < 1:2608399/49‑1 (MQ=255) gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctg > 2:1309035‑M1/1‑21 (MQ=255) gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg < 2:3087391/50‑1 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:4077115‑M1/1‑20 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa < 2:2815901‑M1/50‑31 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:2192041‑M1/1‑20 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt < 2:3287453/50‑1 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt > 2:2448758/1‑50 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt > 1:741788/1‑50 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac > 2:1615708‑M1/1‑19 (MQ=255) tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg < 2:209113‑M1/50‑33 (MQ=255) tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg > 2:1384602‑M1/1‑18 (MQ=255) ataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg > 1:2367288‑M1/1‑17 (MQ=255) taAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgca > 1:1159489‑M1/1‑16 (MQ=255) aaGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcac > 2:1278566‑M1/1‑15 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 2:111827/1‑49 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 2:3240077/1‑49 (MQ=255) aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact < 2:3910660‑M1/50‑37 (MQ=255) aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcac < 1:286418‑M1/49‑36 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTg > 1:549390/1‑49 (MQ=255) gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc < 2:3569324‑M1/50‑39 (MQ=255) gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc > 2:4415895‑M1/1‑12 (MQ=255) gAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 2:3540507/50‑1 (MQ=255) aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg > 1:1604786‑M1/1‑11 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 2:377981/1‑50 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 2:3362742/50‑1 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:673045/1‑50 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:3720550/1‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 2:4085506/1‑49 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc < 1:4127391‑M1/50‑42 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc < 1:354766‑M1/50‑42 (MQ=255) agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg < 1:2842850‑M1/50‑43 (MQ=255) agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg > 1:3161533‑M1/1‑8 (MQ=255) gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg < 1:805159‑M1/50‑44 (MQ=255) gagagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:2983174/50‑1 (MQ=255) gagagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:3790267/50‑1 (MQ=255) agagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:2424670/1‑50 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 1:3149470/50‑1 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 2:669583/50‑1 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 2:2730718/1‑50 (MQ=255) agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa < 2:3978467‑M1/50‑47 (MQ=255) agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa < 1:2314177‑M1/50‑47 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 2:1703908‑M1/50‑48 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:2541617‑M1/50‑48 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 2:1063812‑M1/50‑48 (MQ=255) aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg > 1:4082230‑M1/1‑2 (MQ=255) aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg > 1:2171424‑M1/1‑2 (MQ=255) aggggcaatctttacaagatccgttcctgaacacacggcgtcgggaacgt < 1:2505857‑M1/50‑50 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 2:3889426/1‑50 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:1777153/1‑50 (MQ=255) | AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400240‑4400337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |