| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 63 (0.540) | 108 (0.970) | 64/94 | 0.0 | 64.0% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 61 (0.550) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 180 total aligned reads displayed.
AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 | agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag < 2:606894‑M2/1‑1 (MQ=255)agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag < 1:4422355‑M2/1‑1 (MQ=255) aatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaaggg < 2:3561477‑M2/3‑1 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 1:729356/1‑49 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 2:1059754/1‑49 (MQ=255) cgaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGc > 2:2196826‑M2/45‑49 (MQ=255) tCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCaa > 2:1968880/1‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 2:3905978‑M2/44‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 2:1137125‑M2/44‑50 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt > 1:3429910/1‑50 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt > 2:713732‑M2/43‑50 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc > 2:2899821‑M2/42‑50 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc < 1:4207819‑M2/9‑1 (MQ=255) aaGTCCAAATAAGCATAT‑AGGAAAAGAGAGAATGGCTAAGGGGCAATCtt < 1:4126159/50‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCttt < 1:1478008‑M2/12‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 2:3190549‑M2/39‑49 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCttt < 1:4365176/50‑1 (MQ=255) ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa > 1:4077195‑M2/38‑50 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa < 2:2075780/50‑1 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:838332/1‑50 (MQ=255) tACAAATAAGCATACAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 2:3427010/1‑50 (MQ=255) tcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa > 2:1256066‑M2/37‑49 (MQ=255) tcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa > 2:3790255‑M2/37‑49 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACa < 1:1768137/50‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACa < 1:3305204/50‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:1166837‑M2/35‑48 (MQ=255) aagtacaaatacgcatataaggaaaagagagaaGGGGCAATCTTTAc > 2:2875154‑M2/34‑47 (MQ=255) tAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGAt < 1:2182646/50‑1 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc < 1:2646099‑M2/20‑1 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc > 1:2730502‑M2/31‑50 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc < 1:1728581‑M2/20‑1 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc < 2:3751957‑M2/20‑1 (MQ=255) aaGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc > 2:3036087/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc > 1:3385496/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc < 1:2608399/49‑1 (MQ=255) gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg < 2:3246808/50‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg > 2:1180795‑M2/29‑50 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt > 1:741788/1‑50 (MQ=255) aaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGt > 1:3035494‑M2/28‑50 (MQ=255) aaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGt > 1:623515‑M2/28‑50 (MQ=255) aaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGt > 2:434620‑M2/28‑50 (MQ=255) ataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTc > 1:1795895‑M2/26‑50 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc < 2:802629‑M2/26‑1 (MQ=255) aagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 1:984465‑M2/24‑50 (MQ=255) agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 2:2054453‑M2/23‑49 (MQ=255) agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 2:3932286‑M2/23‑49 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 2:3240077/1‑49 (MQ=255) gcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTg > 2:2718517‑M2/22‑49 (MQ=255) gcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTg > 2:1309035‑M2/22‑49 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTg > 1:549390/1‑49 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa < 2:2556823‑M2/30‑1 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa < 2:2815901‑M2/30‑1 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:2219710‑M2/21‑50 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc > 2:1615708‑M2/20‑50 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 1:2929445‑M2/32‑1 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 2:1384602‑M2/19‑50 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:673045/1‑50 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 2:3362742/50‑1 (MQ=255) ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2367288‑M2/18‑49 (MQ=255) ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2192681‑M2/18‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:3720550/1‑49 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 1:1159489‑M2/17‑50 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 2:1610006‑M2/17‑50 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 2:3849375‑M2/17‑50 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa < 2:405307‑M2/34‑1 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 2:2366289‑M2/17‑50 (MQ=255) gagagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:3790267/50‑1 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:286418‑M2/35‑1 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 2:3910660‑M2/36‑1 (MQ=255) agagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:4074688/1‑50 (MQ=255) agagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:2424670/1‑50 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 1:3149470/50‑1 (MQ=255) gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 2:3569324‑M2/38‑1 (MQ=255) gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 2:4415895‑M2/13‑50 (MQ=255) aaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:1382695‑M2/40‑1 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:354766‑M2/41‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 2:2249980/1‑50 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg < 1:2842850‑M2/42‑1 (MQ=255) tGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:3014838/1‑50 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg < 1:805159‑M2/43‑1 (MQ=255) ggCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGCCgg > 1:2323514/1‑49 (MQ=255) agagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:2053259‑M2/7‑49 (MQ=255) agagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 2:1821864‑M2/7‑49 (MQ=255) gatAAGGGGCAATCTTGACAAGATCCGTTCCTGAACGCACGGCGTCGGGa < 2:3316897/48‑1 (MQ=255) gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa < 1:1995824‑M2/45‑1 (MQ=255) cTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa < 1:2593806/50‑1 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa < 2:3978467‑M2/46‑1 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:687272‑M2/5‑50 (MQ=255) tAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 1:1334734/1‑50 (MQ=255) tAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 2:31088/1‑50 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 2:1703908‑M2/47‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:2541617‑M2/47‑1 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACg > 2:1933058‑M2/3‑50 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACg < 1:2299147‑M2/48‑1 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACg > 1:2171424‑M2/3‑50 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACg > 2:111434‑M2/3‑50 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 2:2943509‑M2/49‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACACACGGCGTCGGGAACGt < 1:2505857‑M2/49‑1 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg < 1:855124/50‑1 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg > 1:485296/1‑50 (MQ=255) | AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |