| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 101 [0] | [0] 98 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 97 (0.650) | 63/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 101 total aligned reads displayed.
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > NC_000913/3906599‑3906645 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:2855292/50‑1AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:3141147/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1287342/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1078036/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:5378184/50‑1 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 2:2334809/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 2:5159370/50‑1 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG < 1:2482751/50‑1 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:1271627/1‑49 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2886268/1‑49 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA < 1:3830008/50‑1 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA < 2:513047/50‑1 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 2:628744/1‑50 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 2:3019887/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 2:4926902/50‑1 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 2:2446230/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 2:2315103/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 2:2945281/50‑1 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:4691080/1‑50 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:4398087/1‑49 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 2:4575657/1‑50 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 2:738586/48‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC < 2:2844046/49‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA < 1:4717551/48‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCA < 2:4268847/50‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCA < 2:4609786/50‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCA < 1:5824722/50‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 2:4851037/1‑48 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:2673427/1‑50 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:1404045/1‑50 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAATTCACCAG > 1:5110225/1‑50 GTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:900595/1‑49 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:1281734/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 2:5519725/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:798420/50‑1 AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 2:5116647/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:5296560/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:855640/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:758731/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:4228276/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 2:1602311/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 2:1677411/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 2:70853/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:3501193/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:3418832/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT < 1:5626103/49‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 2:385005/1‑50 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT < 1:1160225/50‑1 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG > 1:2735204/1‑50 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG > 2:5002198/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 2:1143208/50‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:2084602/50‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:4648693/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 2:1155858/1‑49 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA > 2:1595002/1‑50 TCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:639883/1‑50 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 2:4174426/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 2:4625037/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:5374760/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:5133599/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 2:3748507/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 2:588645/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 2:5664349/1‑49 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:5797338/50‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:3073475/50‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 2:5817099/1‑48 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCCCTGGTTATGTCA < 2:3029272/50‑1 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:1650635/1‑50 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 2:1623920/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 2:1410019/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 2:708532/49‑1 TTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT > 2:2851116/1‑50 TGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT > 1:1614941/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT > 1:134804/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT < 1:2553105/49‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT < 2:4802461/48‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 2:3062879/49‑1 CGAGGAAAAGTGCCGACTTCTTCAGTATTCTCTGGTTATGTCAGGTTTT < 1:5299368/49‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:306511/1‑50 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC < 1:4285404/50‑1 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC > 1:715509/1‑50 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 2:3921615/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT > 2:1618402/1‑50 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 2:2152140/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:5485972/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:3687878/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:2553357/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 2:3059585/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:5691568/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 2:3598122/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 2:2905957/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:3637463/50‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 2:2721994/1‑49 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:3300470/1‑49 AGTGCAGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 2:3978388/1‑50 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:3191290/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 2:165578/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > 1:4695366/1‑50 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 2:4984834/1‑50 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 2:1095462/50‑1 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > NC_000913/3906599‑3906645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |