| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 101 [0] | [0] 98 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 97 (0.650) | 63/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 101 total aligned reads displayed.
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATAT > NC_000913/3888382‑3888478 | aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:2855292‑M1/50‑1 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:3141147‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1287342‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1078036‑M1/1‑50 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 1:5378184‑M1/50‑2 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 2:2334809‑M1/1‑49 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 2:5159370‑M1/50‑2 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcg < 1:2482751‑M1/50‑3 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:1271627‑M1/1‑48 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:2886268‑M1/1‑48 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga < 1:3830008‑M1/50‑4 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga < 2:513047‑M1/50‑4 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 2:628744‑M1/1‑47 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 2:3019887‑M1/1‑47 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 2:4926902‑M1/50‑5 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 2:2446230‑M1/50‑5 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 2:2315103‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact < 2:2945281‑M1/50‑6 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:4691080‑M1/1‑44 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:4398087‑M1/1‑43 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca > 2:4575657‑M1/1‑42 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 2:738586‑M1/48‑7 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac < 2:2844046‑M1/49‑10 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca < 1:4717551‑M1/48‑9 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 2:4268847‑M1/50‑12 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 2:4609786‑M1/50‑12 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 1:5824722‑M1/50‑12 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 2:4851037‑M1/1‑39 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:2673427‑M1/1‑38 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:1404045‑M1/1‑38 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgaattcaccag > 1:5110225‑M1/1‑38 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:900595‑M1/1‑37 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:1281734‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 2:5519725‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:798420‑M1/50‑15 (MQ=255) aataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat > 2:5116647‑M1/1‑35 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:5296560‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:855640‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:758731‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 1:4228276‑M1/49‑16 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 2:1602311‑M1/49‑16 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc < 2:1677411‑M1/50‑18 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 2:70853‑M1/50‑20 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 1:3501193‑M1/50‑20 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 1:3418832‑M1/50‑20 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 1:5626103‑M1/49‑19 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct > 2:385005‑M1/1‑30 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:1160225‑M1/50‑21 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:2735204‑M1/1‑29 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 2:5002198‑M1/1‑29 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg < 2:1143208‑M1/50‑23 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:2084602‑M1/50‑25 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt < 1:4648693‑M1/49‑24 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 2:1155858‑M1/1‑26 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta > 2:1595002‑M1/1‑25 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:639883‑M1/1‑23 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtc < 2:4174426‑M1/50‑30 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 2:4625037‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:5374760‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:5133599‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 2:3748507‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 2:588645‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:5664349‑M1/1‑21 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:5797338‑M1/50‑31 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:3073475‑M1/50‑31 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:5817099‑M1/1‑20 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattccctggttatgtca < 2:3029272‑M1/50‑31 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:1650635‑M1/1‑19 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 2:1623920‑M1/1‑19 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 2:1410019‑M1/50‑33 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag < 2:708532‑M1/49‑32 (MQ=255) ttGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt > 2:2851116‑M1/1‑16 (MQ=255) tGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt > 1:1614941‑M1/1‑15 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt > 1:134804‑M1/1‑14 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt < 1:2553105‑M1/49‑36 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt < 2:4802461‑M1/48‑35 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 2:3062879‑M1/49‑37 (MQ=255) cGAGGAAAAGTGCcgacttcttcagtattctctggttatgtcaggtttt < 1:5299368‑M1/49‑37 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:306511‑M1/1‑12 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 1:4285404‑M1/50‑39 (MQ=255) aGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcc > 1:715509‑M1/1‑11 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 2:3921615‑M1/50‑41 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct > 2:1618402‑M1/1‑10 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 2:2152140‑M1/50‑41 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:5485972‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:3687878‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:2553357‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 2:3059585‑M1/50‑42 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:5691568‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 2:3598122‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 2:2905957‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:3637463‑M1/50‑43 (MQ=255) tAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 2:2721994‑M1/1‑7 (MQ=255) tAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 1:3300470‑M1/1‑7 (MQ=255) aGTGCagacttcaccagtattctctggttatgtcaggttttgcctgcgaa > 2:3978388‑M1/1‑5 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:3191290‑M1/50‑47 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 2:165578‑M1/50‑47 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat > 1:4695366‑M1/1‑4 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 2:4984834‑M1/1‑3 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 2:1095462‑M1/50‑48 (MQ=255) | AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATAT > NC_000913/3888382‑3888478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |