| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 101 [0] | [0] 98 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 97 (0.650) | 63/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:5378184‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 2:2334809‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 2:5159370‑M2/1‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:1271627‑M2/49‑49 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:2886268‑M2/49‑49 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:2482751‑M2/2‑1 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa < 1:3830008‑M2/3‑1 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa > 2:3019887‑M2/48‑50 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa < 2:513047‑M2/3‑1 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa > 2:628744‑M2/48‑50 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc < 2:2446230‑M2/4‑1 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc < 2:4926902‑M2/4‑1 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 2:2315103‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 2:2945281‑M2/5‑1 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:4691080‑M2/45‑50 (MQ=255) ctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:4398087‑M2/44‑49 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt < 2:738586‑M2/6‑1 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 2:4575657‑M2/43‑50 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa < 1:4717551‑M2/8‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc < 2:2844046‑M2/9‑1 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 2:4851037‑M2/40‑48 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCa < 2:4609786‑M2/11‑1 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCa < 2:4268847‑M2/11‑1 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCa < 1:5824722‑M2/11‑1 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:2673427‑M2/39‑50 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:1404045‑M2/39‑50 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAATTCACCAg > 1:5110225‑M2/39‑50 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:900595‑M2/38‑49 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:798420‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 2:5519725‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:1281734‑M2/14‑1 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 2:5116647‑M2/36‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:758731‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:855640‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:5296560‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 1:4228276‑M2/15‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 2:1602311‑M2/15‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 2:1677411‑M2/17‑1 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc < 1:3501193‑M2/19‑1 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc < 1:3418832‑M2/19‑1 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc < 2:70853‑M2/19‑1 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct < 1:5626103‑M2/18‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct > 2:385005‑M2/31‑50 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:1160225‑M2/20‑1 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 1:2735204‑M2/30‑50 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 2:5002198‑M2/30‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 2:1143208‑M2/22‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGtt < 1:2084602‑M2/24‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 2:1155858‑M2/27‑49 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:4648693‑M2/23‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa > 2:1595002‑M2/26‑50 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:639883‑M2/24‑50 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 2:5664349‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 2:3748507‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 2:4625037‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:5133599‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:5374760‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 2:588645‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 2:4174426‑M2/29‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 2:5817099‑M2/21‑48 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:3073475‑M2/30‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:5797338‑M2/30‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCCCTGGTTATGTCa < 2:3029272‑M2/30‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:1650635‑M2/20‑50 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 2:1623920‑M2/20‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 2:1410019‑M2/32‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 2:708532‑M2/31‑1 (MQ=255) ttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt > 2:2851116‑M2/17‑50 (MQ=255) tgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt > 1:1614941‑M2/16‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt > 1:134804‑M2/15‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt < 2:833434‑M2/35‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt < 1:2553105‑M2/35‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 2:4802461‑M2/34‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 2:3062879‑M2/36‑1 (MQ=255) cgaggaaaagtgcCGACTTCTTCAGTATTCTCTGGTTATGTCAGGtttt < 1:5299368‑M2/36‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:4285404‑M2/38‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:306511‑M2/13‑50 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGcc > 1:715509‑M2/12‑50 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt > 2:1618402‑M2/11‑50 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 2:2152140‑M2/40‑1 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 2:3921615‑M2/40‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 2:3059585‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:5485972‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:2553357‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:3687878‑M2/41‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 2:2905957‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:5691568‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 2:3598122‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:3637463‑M2/42‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc > 2:2721994‑M2/8‑49 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc > 1:3300470‑M2/8‑49 (MQ=255) agtgcAGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa > 2:3978388‑M2/6‑50 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt > 1:4695366‑M2/5‑50 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:3191290‑M2/46‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 2:165578‑M2/46‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 2:4984834‑M2/4‑50 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 2:1095462‑M2/47‑1 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg > 1:1475404/1‑50 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |