| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389–15438 | 20563 | 5126–5175 | 72 [0] | [0] 74 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 72 (0.780) | 46/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15341‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 1:6191113/50‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACC < 1:6923673/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCc > 1:2271572/1‑49 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:6837201/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:3511114/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:1551513/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:6979935/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:6839638/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:5096426/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:4610687/49‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCc > 1:7065756/1‑48 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAA > 1:6110144/1‑50 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:98815/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:5742611/50‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:3433968/49‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGAATACTCCACCTCAATGT > 1:4541484/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCCATGTG > 1:7008809/1‑50 AGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTCCCTCCATTTGT > 1:4086081/1‑50 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:5800320/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:2023085/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGCGATCACTCTACCTCAATGTGTAT > 1:5033579/1‑50 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:6326413/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGACCACTCTACCTCAATGTGTAT > 1:4642619/1‑49 TGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCTCCTCAATGTGTATCAC > 1:4460321/1‑50 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:973319/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:6435133/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:4130457/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:4070211/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:4007357/49‑1 GAGCACCTGTAAAGTGGCGGGGGTCACTCCACCTCCATTTGTATCACAA > 1:6544500/1‑49 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:3339928/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:3209470/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:5491246/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:2367770/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:6831960/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:3696578/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:3281573/48‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:3217143/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:3749003/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:2695670/1‑50 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:2714998/1‑50 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:5776918/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:5567329/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:4624788/49‑1 CGGGGATCACTGTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG < 1:6737644/50‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:1857155/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:1518707/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:1508141/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:5462145/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:3311392/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:342803/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:1595020/50‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2132145/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 1:2856533/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1903075/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:3065676/1‑48 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:6719639/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1908930/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:4034527/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:4581036/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:4079724/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:2874344/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:6910858/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:1889288/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:4859190/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:5936182/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:5485884/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:5695664/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:2150968/49‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:5615820/49‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:1284279/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:55408/1‑49 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15341‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |