| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389–15438 | 20563 | 5126–5175 | 72 [0] | [0] 74 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 72 (0.780) | 46/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15341‑15435 | gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:6191113‑M1/50‑3 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacc < 1:6923673‑M1/50‑5 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:6837201‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:3511114‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtaccc > 1:2271572‑M1/1‑45 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:1551513‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:6979935‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:6839638‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:5096426‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:4610687‑M1/49‑7 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcc > 1:7065756‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaa > 1:6110144‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaa < 1:98815‑M1/50‑9 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:5742611‑M1/50‑10 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:3433968‑M1/49‑11 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGAATACTCcacctcaatgt > 1:4541484‑M1/1‑39 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacccccatgtg > 1:7008809‑M1/1‑38 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtccctccatttgt > 1:4086081‑M1/1‑37 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:5800320‑M1/50‑14 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:2023085‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGCGATCACTCtacctcaatgtgtat > 1:5033579‑M1/1‑35 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:6326413‑M1/50‑17 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGACCACTCtacctcaatgtgtat > 1:4642619‑M1/1‑34 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGGTCACTCctcctcaatgtgtatcac > 1:4460321‑M1/1‑32 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:973319‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:6435133‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:4130457‑M1/50‑19 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaa < 1:4070211‑M1/50‑21 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:4007357‑M1/49‑20 (MQ=255) gAGCACCTGTAAAGTGGCGGGGGTCACTCcacctccatttgtatcacaa > 1:6544500‑M1/1‑29 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 1:3339928‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 1:3209470‑M1/50‑22 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:5491246‑M1/50‑26 (MQ=255) ccTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:2367770‑M1/50‑27 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatatt < 1:6831960‑M1/50‑31 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:3696578‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:3281573‑M1/48‑29 (MQ=255) aGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctt < 1:3217143‑M1/50‑34 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:3749003‑M1/50‑35 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:2695670‑M1/1‑15 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:2714998‑M1/1‑15 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:5776918‑M1/1‑15 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:5567329‑M1/49‑37 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:4624788‑M1/49‑37 (MQ=255) cGGGGATCACTGtacctcaatgtgtatcacaatatccatattctttgtgg < 1:6737644‑M1/50‑39 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:1857155‑M1/1‑12 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:1518707‑M1/1‑12 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:1508141‑M1/1‑12 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:5462145‑M1/1‑12 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:3311392‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:342803‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg < 1:1595020‑M1/50‑40 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:2132145‑M1/1‑10 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:2856533‑M1/50‑41 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:1903075‑M1/1‑9 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:3065676‑M1/1‑8 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 1:6719639‑M1/1‑7 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:1908930‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:4034527‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:4581036‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:4079724‑M1/1‑6 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:2874344‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:6910858‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:1889288‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:4859190‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:5936182‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:5485884‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:5695664‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:2150968‑M1/49‑46 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:5615820‑M1/49‑46 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:1284279‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:55408‑M1/1‑2 (MQ=255) | GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15341‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |