| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389–15438 | 20563 | 5126–5175 | 72 [0] | [0] 74 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 72 (0.780) | 46/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20516‑20610 | gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTa < 1:6191113‑M2/2‑1 (MQ=255) gtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTAcc < 1:6923673‑M2/4‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTaccc > 1:2271572‑M2/46‑49 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 1:6837201‑M2/5‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 1:3511114‑M2/5‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 1:4610687‑M2/6‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCa < 1:1551513‑M2/7‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCa < 1:6979935‑M2/7‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCa < 1:6839638‑M2/7‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCa < 1:5096426‑M2/7‑1 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcgggggtcactcTACCtcc > 1:7065756‑M2/43‑48 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcgggggtcactcTACCTCaa > 1:6110144‑M2/43‑50 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCaa < 1:98815‑M2/8‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:5742611‑M2/9‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:3433968‑M2/10‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggaatactcCACCTCAAtgt > 1:4541484‑M2/40‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCCAtgtg > 1:7008809‑M2/39‑50 (MQ=255) agatatgcgagcacctgtaaagtggcgggggtcactcTCCCTCCATttgt > 1:4086081‑M2/38‑50 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:5800320‑M2/13‑1 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:2023085‑M2/15‑1 (MQ=255) atatgcgagcacctgtaaagtggcggcgatcactcTACCTCAATGTGTAt > 1:5033579‑M2/36‑50 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:6326413‑M2/16‑1 (MQ=255) tatgcgagcacctgtaaagtggcggggaccactcTACCTCAATGTGTAt > 1:4642619‑M2/35‑49 (MQ=255) tgcgagcacctgtaaagtggcgggggtcactcCTCCTCAATGTGTATcac > 1:4460321‑M2/33‑50 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:6435133‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:4130457‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:973319‑M2/18‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:4007357‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACaa < 1:4070211‑M2/20‑1 (MQ=255) gagcacctgtaaagtggcgggggtcactcCACCTCCATTTGTATCACaa > 1:6544500‑M2/30‑49 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 1:3339928‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 1:3209470‑M2/21‑1 (MQ=255) acctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATcc < 1:5491246‑M2/25‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:2367770‑M2/26‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCatat < 1:3696578‑M2/29‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:3281573‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATAtt < 1:6831960‑M2/30‑1 (MQ=255) agtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCtt < 1:3217143‑M2/33‑1 (MQ=255) gtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCttt < 1:3749003‑M2/34‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg > 1:2695670‑M2/16‑50 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg > 1:2714998‑M2/16‑50 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg > 1:5776918‑M2/16‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:5567329‑M2/36‑1 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:4624788‑M2/36‑1 (MQ=255) cggggatcactgTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg < 1:6737644‑M2/38‑1 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:1857155‑M2/13‑50 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:1518707‑M2/13‑50 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:1508141‑M2/13‑50 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:5462145‑M2/13‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:3311392‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:342803‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg < 1:1595020‑M2/39‑1 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:2132145‑M2/11‑50 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg < 1:2856533‑M2/40‑1 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:1903075‑M2/10‑49 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:3065676‑M2/9‑48 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 1:6719639‑M2/8‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:1908930‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:4034527‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:4079724‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:4581036‑M2/7‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:2150968‑M2/45‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:5615820‑M2/45‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:1889288‑M2/5‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt < 1:6910858‑M2/46‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:2874344‑M2/5‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt < 1:4859190‑M2/46‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:5936182‑M2/5‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:5485884‑M2/5‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:5695664‑M2/5‑50 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1284279‑M2/3‑49 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:55408‑M2/3‑49 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:3787756/1‑47 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:621973/1‑47 (MQ=255) | CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20516‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |