| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 57 [0] | [0] 57 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 56 (0.590) | 40/98 | 0.4 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:1874194/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGT > 1:4916196/1‑50 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:3557231/49‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:4790050/49‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCG > 1:137852/1‑50 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG > 1:3473847/1‑49 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGCTCCGc > 1:6585208/1‑48 AGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGT > 1:6591295/1‑49 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCCTAA > 1:5265227/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGAGGCTCGGTTCCGTAAC > 1:6357113/1‑50 AGAAACTTCTCGAGGAACTGGCGAGTGCGAGGCTGCTCGGTTCCGTAACG < 1:5208741/50‑1 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGT < 1:939925/50‑1 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGT > 1:617599/1‑50 AACTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGTTCCGTAACGgt > 1:550879/1‑47 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA > 1:6277667/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:857543/48‑1 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA > 1:3068265/1‑50 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:4171181/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:5678403/1‑50 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:1292895/1‑49 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:3379979/1‑48 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:4213618/50‑1 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG > 1:6355874/1‑49 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:4804902/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:6624652/1‑50 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:261406/50‑1 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:7067245/50‑1 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:2467606/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 1:1025486/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA > 1:2511531/1‑50 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 1:1627071/50‑1 GCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC > 1:3355349/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:3897550/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:6363056/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:2979362/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:1247318/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:1080323/49‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:3153901/49‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG < 1:6736034/50‑1 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA < 1:5187497/50‑1 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA > 1:6254426/1‑49 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:2482068/50‑1 GCTGCGCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:4231966/50‑1 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAA < 1:2059690/50‑1 GCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:4853261/1‑49 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:6271239/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:530922/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:5832316/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:453798/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:1863146/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:2694196/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:4528702/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:4640569/48‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC < 1:2580744/50‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC < 1:2563042/50‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC < 1:5132099/50‑1 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |