| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 57 [0] | [0] 57 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 56 (0.590) | 40/98 | 0.4 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997062‑1997160 | ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCgg > 1:1375257/1‑50 (MQ=255) tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGt > 1:1874194‑M1/1‑49 (MQ=255) tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGt > 1:4916196‑M1/1‑49 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtt < 1:3557231‑M1/49‑3 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:4790050‑M1/49‑5 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccg > 1:137852‑M1/1‑45 (MQ=255) cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccg > 1:3473847‑M1/1‑44 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGctccgc > 1:6585208‑M1/1‑43 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgt > 1:6591295‑M1/1‑43 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccctaa > 1:5265227‑M1/1‑42 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGGGCGAGGAGGCTCGGttccgtaac > 1:6357113‑M1/1‑41 (MQ=255) agAAACTTCTCGAGGAACTGGCGAGTGCGAGGCTGCTCGGttccgtaacg < 1:5208741‑M1/50‑11 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgt < 1:939925‑M1/50‑12 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgt > 1:617599‑M1/1‑39 (MQ=255) aaCTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGttccgtaacggt > 1:550879‑M1/1‑37 (MQ=255) aCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttta > 1:6277667‑M1/1‑36 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatg < 1:857543‑M1/48‑20 (MQ=255) aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta > 1:3068265‑M1/1‑28 (MQ=255) aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta < 1:4171181‑M1/50‑23 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc > 1:5678403‑M1/1‑25 (MQ=255) cTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:1292895‑M1/1‑23 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:3379979‑M1/1‑22 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagg < 1:4213618‑M1/50‑31 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag > 1:6355874‑M1/1‑20 (MQ=255) cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga < 1:4804902‑M1/50‑32 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat > 1:6624652‑M1/1‑18 (MQ=255) ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt < 1:261406‑M1/50‑34 (MQ=255) ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt < 1:7067245‑M1/50‑34 (MQ=255) ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt < 1:2467606‑M1/50‑34 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta < 1:1025486‑M1/50‑35 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta > 1:2511531‑M1/1‑16 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta < 1:1627071‑M1/50‑35 (MQ=255) gCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc > 1:3355349‑M1/1‑14 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc < 1:3897550‑M1/50‑38 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc < 1:6363056‑M1/50‑38 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:2979362‑M1/1‑13 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:1247318‑M1/1‑13 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc < 1:1080323‑M1/49‑37 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc < 1:3153901‑M1/49‑37 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg < 1:6736034‑M1/50‑39 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccgaa < 1:5187497‑M1/50‑41 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga > 1:6254426‑M1/1‑10 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa < 1:2482068‑M1/50‑42 (MQ=255) gctgcgCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa < 1:4231966‑M1/50‑42 (MQ=255) ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaa < 1:2059690‑M1/50‑43 (MQ=255) gctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:4853261‑M1/1‑6 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaata < 1:6271239‑M1/50‑46 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:530922‑M1/1‑2 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:5832316‑M1/50‑49 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:453798‑M1/50‑49 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa < 1:1863146‑M1/48‑47 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa < 1:2694196‑M1/48‑47 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa < 1:4528702‑M1/48‑47 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa < 1:4640569‑M1/48‑47 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac < 1:2580744‑M1/50‑50 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac < 1:2563042‑M1/50‑50 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac < 1:5132099‑M1/50‑50 (MQ=255) | TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997062‑1997160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |