| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 57 [0] | [0] 57 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 56 (0.590) | 40/98 | 0.4 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC > NC_000913/2023630‑2023728 | tattgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggt > 1:1874194‑M2/50‑50 (MQ=255)tattgcagcagaaacttctcgaggaactggcgggggcgcggctgctcggt > 1:4916196‑M2/50‑50 (MQ=255) ttgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggtt < 1:3557231‑M2/2‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc < 1:4790050‑M2/4‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggggcgaggctgctcggTTCCg > 1:137852‑M2/46‑50 (MQ=255) cagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCg > 1:3473847‑M2/45‑49 (MQ=255) agcagaaacttctcgaggaactggcgggtgcgagggtgctcggCTCcgc > 1:6585208‑M2/44‑48 (MQ=255) agcagaaacttctcgaggaactggcgggggcgaggctgctcggTTCCGt > 1:6591295‑M2/44‑49 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCCTaa > 1:5265227‑M2/43‑50 (MQ=255) cagaaacttctcgaggaactggcgggggcgaggaggctcggTTCCGTAAc > 1:6357113‑M2/42‑50 (MQ=255) agaaacttctcgaggaactggcgagtgcgaggctgctcggTTCCGTAACg < 1:5208741‑M2/10‑1 (MQ=255) gaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGt < 1:939925‑M2/11‑1 (MQ=255) gaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGTAACGt > 1:617599‑M2/40‑50 (MQ=255) aacttctcgaggaactggcgggggcgcggctgctcggTTCCGTAacggt > 1:550879‑M2/38‑47 (MQ=255) acttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTa > 1:6277667‑M2/37‑50 (MQ=255) gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg < 1:857543‑M2/19‑1 (MQ=255) aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa < 1:4171181‑M2/22‑1 (MQ=255) aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa > 1:3068265‑M2/29‑50 (MQ=255) aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc > 1:5678403‑M2/26‑50 (MQ=255) ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt > 1:1292895‑M2/24‑49 (MQ=255) tggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt > 1:3379979‑M2/23‑48 (MQ=255) gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAgg < 1:4213618‑M2/30‑1 (MQ=255) gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg > 1:6355874‑M2/21‑49 (MQ=255) cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa < 1:4804902‑M2/31‑1 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt > 1:6624652‑M2/19‑50 (MQ=255) ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt < 1:261406‑M2/33‑1 (MQ=255) ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt < 1:2467606‑M2/33‑1 (MQ=255) ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt < 1:7067245‑M2/33‑1 (MQ=255) gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa < 1:1025486‑M2/34‑1 (MQ=255) gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa < 1:1627071‑M2/34‑1 (MQ=255) gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa > 1:2511531‑M2/17‑50 (MQ=255) gcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc > 1:3355349‑M2/15‑50 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc < 1:3897550‑M2/37‑1 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc < 1:6363056‑M2/37‑1 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc > 1:2979362‑M2/14‑50 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc > 1:1247318‑M2/14‑50 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc < 1:1080323‑M2/36‑1 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc < 1:3153901‑M2/36‑1 (MQ=255) gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg < 1:6736034‑M2/38‑1 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaa < 1:5187497‑M2/40‑1 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa > 1:6254426‑M2/11‑49 (MQ=255) gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:2482068‑M2/41‑1 (MQ=255) gctgcgcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:4231966‑M2/41‑1 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaa < 1:2059690‑M2/42‑1 (MQ=255) gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 1:4853261‑M2/7‑49 (MQ=255) ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaata < 1:6271239‑M2/45‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa < 1:1863146‑M2/46‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa < 1:2694196‑M2/46‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa < 1:4528702‑M2/46‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa < 1:4640569‑M2/46‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:453798‑M2/48‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:5832316‑M2/48‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata > 1:530922‑M2/3‑50 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc < 1:2580744‑M2/49‑1 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc < 1:2563042‑M2/49‑1 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc < 1:5132099‑M2/49‑1 (MQ=255) ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc > 1:2506378/1‑50 (MQ=255) | AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC > NC_000913/2023630‑2023728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |