| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 115 [0] | [0] 112 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 111 (1.180) | 64/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 115 total aligned reads displayed.
ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466495‑2466593 | aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:6477624/1‑50 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:6979023/1‑49 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:5014066‑M1/50‑2 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:5809509/1‑48 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:4123111/1‑47 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta < 1:4967745‑M1/49‑3 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:6193943‑M1/50‑5 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:5056287‑M1/50‑5 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:6179869‑M1/50‑6 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:865899‑M1/50‑7 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:2138141‑M1/1‑44 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:208814‑M1/1‑44 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:4362014‑M1/50‑7 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcc < 1:1103519‑M1/50‑8 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcc < 1:322142‑M1/50‑8 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca < 1:5970316‑M1/50‑9 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:3386500‑M1/1‑42 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca < 1:1095800‑M1/50‑9 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:4727790‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:3455005‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:2804358‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:1861321‑M1/49‑10 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatac < 1:3770198‑M1/50‑12 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:3711207‑M1/1‑39 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1025602‑M1/1‑39 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:3197682‑M1/1‑39 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1429116‑M1/1‑39 (MQ=255) aaGTGGATAAAATAATTTTGCCCACCGGATTTTTGCCCtagagccataca < 1:810640‑M1/50‑13 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:4296365‑M1/1‑38 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag < 1:1731692‑M1/50‑14 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:2036836‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:1874033‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:6929430‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 1:6953925‑M1/50‑16 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:1155813‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:5477731‑M1/1‑35 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:5149635‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:640619‑M1/1‑33 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct < 1:6093839‑M1/49‑17 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:5122852‑M1/1‑32 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:4609949‑M1/1‑32 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:5026600‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:3463648‑M1/50‑22 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca < 1:1886300‑M1/49‑21 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact < 1:2942349‑M1/50‑23 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact < 1:3243405‑M1/50‑23 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:1947504‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:5359537‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:40234‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:2461215‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:3554013‑M1/50‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:1061498‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:5726816‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:1698427‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2784774‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga < 1:6847445‑M1/49‑26 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2291090‑M1/1‑23 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:140948‑M1/1‑23 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3244857‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:4528089‑M1/49‑29 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:4965067‑M1/49‑29 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:924492‑M1/49‑29 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 1:2670961‑M1/1‑20 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:2936731‑M1/1‑19 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc < 1:868790‑M1/50‑33 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:1063136‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 1:556706‑M1/50‑34 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:2230188‑M1/1‑17 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:7090201‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:6517281‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:1734367‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:2823181‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt < 1:4893169‑M1/50‑36 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtc < 1:815622‑M1/50‑37 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:3488655‑M1/1‑14 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:6272871‑M1/1‑14 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:1562549‑M1/50‑38 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:5790064‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:5183827‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:571313‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:4973365‑M1/1‑12 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt < 1:3966206‑M1/50‑40 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:4677968‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:6070098‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:2885391‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:1689690‑M1/1‑10 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:5124640‑M1/1‑10 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:2974699‑M1/50‑42 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt > 1:2228240‑M1/1‑9 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:2974368‑M1/1‑8 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:2419034‑M1/1‑6 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta < 1:887997‑M1/49‑46 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta < 1:1042011‑M1/49‑46 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaa < 1:3119454‑M1/50‑48 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa < 1:4015380‑M1/49‑47 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:6039703‑M1/1‑2 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:2002177‑M1/1‑2 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaat < 1:1360958‑M1/50‑50 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaat < 1:927022‑M1/50‑50 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:1105909‑M1/1‑1 (MQ=255) | ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466495‑2466593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |