| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 115 [0] | [0] 112 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 111 (1.180) | 64/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 112 total aligned reads displayed.
ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 | tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:5014066‑M2/1‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:4967745‑M2/2‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 1:6193943‑M2/4‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:208814‑M2/45‑50 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:2138141‑M2/45‑50 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:865899‑M2/6‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:4362014‑M2/6‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGcc < 1:1103519‑M2/7‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:2000292‑M2/44‑49 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:3386500‑M2/43‑50 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa < 1:1095800‑M2/8‑1 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa < 1:5970316‑M2/8‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:3527849‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:3455005‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:4727790‑M2/10‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:2804358‑M2/10‑1 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:3197682‑M2/40‑49 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:1025602‑M2/40‑49 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:1429116‑M2/40‑49 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATAc < 1:3770198‑M2/11‑1 (MQ=255) aagtggataaaataattttgcccaccggatttttgcccTAGAGCCATACa < 1:810640‑M2/12‑1 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:4870129‑M2/39‑48 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:4296365‑M2/39‑48 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:1731692‑M2/13‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:4270822‑M2/13‑1 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:6929430‑M2/36‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc < 1:6953925‑M2/15‑1 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:5477731‑M2/36‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:1155813‑M2/36‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:1874033‑M2/36‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:2036836‑M2/36‑50 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:640619‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt < 1:1703273‑M2/16‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt < 1:6093839‑M2/16‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:5149635‑M2/17‑1 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:5122852‑M2/33‑50 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:4609949‑M2/33‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca < 1:1886300‑M2/20‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:604561‑M2/30‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac < 1:812229‑M2/21‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac < 1:3463648‑M2/21‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:5026600‑M2/30‑50 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 1:3243405‑M2/22‑1 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 1:2942349‑M2/22‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 1:2461215‑M2/23‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:1947504‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:5359537‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:40234‑M2/28‑50 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCg < 1:3554013‑M2/24‑1 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCg < 1:2415458‑M2/24‑1 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:1698427‑M2/26‑50 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:1061498‑M2/26‑50 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:5726816‑M2/26‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa < 1:6847445‑M2/25‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:2784774‑M2/25‑50 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:2291090‑M2/24‑49 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:140948‑M2/24‑49 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:3244857‑M2/23‑48 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 1:4528089‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 1:4965067‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 1:924492‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 1:5056456‑M2/28‑1 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:2670961‑M2/21‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:2936731‑M2/20‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc < 1:868790‑M2/32‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc < 1:2933215‑M2/31‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt < 1:556706‑M2/33‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:1063136‑M2/18‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:2230188‑M2/18‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt < 1:4893169‑M2/35‑1 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:6517281‑M2/16‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:2823181‑M2/16‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:1734367‑M2/16‑50 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:6272871‑M2/15‑49 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:3488655‑M2/15‑49 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTc < 1:815622‑M2/36‑1 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCa < 1:1562549‑M2/37‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:571313‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:5790064‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:5183827‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:4973365‑M2/13‑50 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt < 1:3966206‑M2/39‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 1:6070098‑M2/40‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 1:5124640‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 1:1689690‑M2/11‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:3220082‑M2/10‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt < 1:2974699‑M2/41‑1 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 1:2974368‑M2/9‑50 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:2419034‑M2/7‑49 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa < 1:1042011‑M2/45‑1 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa < 1:887997‑M2/45‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 1:3119454‑M2/47‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa < 1:4015380‑M2/46‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:6495479‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:6039703‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:2002177‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:1108090‑M2/3‑50 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:1105909‑M2/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAt < 1:927022‑M2/49‑1 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:6138950/1‑50 (MQ=255) | ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |