| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 115 [0] | [0] 116 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 112 (0.770) | 54/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 115 total aligned reads displayed.
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:682252/1‑49AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCGCTCT > 2:200902/1‑50 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTA > 1:4928793/1‑50 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:232938/49‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:3509004/49‑1 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC < 1:5482945/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 2:5230754/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 2:5654703/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:556212/50‑1 GCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCT > 1:4461696/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:2507169/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 2:4795016/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC > 1:4816840/1‑49 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 2:570184/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTTCCTCAAT > 2:2640846/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCTCACTCAAT > 2:3777302/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:5121504/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 2:1042109/50‑1 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCAATCTTCCTCCATG > 2:1148004/1‑50 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCATG > 2:2732522/1‑50 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAACAACCTACCTCAAat > 2:5502439/1‑48 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCAATGT > 2:1985476/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCATGT > 1:3005083/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:5251480/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 2:4795410/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:3549352/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCATGTGT > 1:674273/1‑50 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 2:2284955/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:2373873/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCTACCTCCATGTGTA > 1:517354/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 2:4278951/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTCCCCCCATGTGTAT > 2:2912721/1‑49 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 2:2459456/50‑1 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGTGTATCA > 1:1848314/1‑50 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCAATGTGTATCA > 2:5632105/1‑50 ATGCGAGCACCTGTAAAGTGGCGGGGATGACTCTACCTCAAAGTGTAACA > 2:5481496/1‑50 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:2836713/50‑1 GCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCAAGTGTATCAC > 1:1891836/1‑49 GCGAGCACCTGTAAAGTGGCGGGGAGCACCCTACCCCAATGTGTATTAC > 1:4085392/1‑49 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCCTGTGTATCACAA > 2:3178028/1‑49 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCATGTGTATCACAA > 1:5468813/1‑49 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 2:5686547/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 2:3516400/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2958491/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACCCTACCTCCATGTGTATCACAA > 1:5032830/1‑49 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 2:4865699/50‑1 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:252248/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:3547175/50‑1 CTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCAT < 1:5404173/50‑1 CTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCAT < 2:4301563/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 2:5598860/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:4648215/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:4737364/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:5255191/48‑1 TAAAGTGGCGGGGATCACTCTACCACAATGTGTATCACAATATCCATATT < 2:2013292/50‑1 TAAAGTGGCGGGGAGCACTCTACCTCAATGTGTATCACAAAATCCATATT > 2:402237/1‑50 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:1404753/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT > 2:1185399/1‑50 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:1689255/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:2939052/49‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 2:4961662/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 2:1883806/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 2:4070536/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATGTCCATATTCTTTG < 1:5113164/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG < 1:3510288/50‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:1082806/1‑50 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 2:729351/1‑50 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:3821572/1‑50 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:4265954/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:3078278/49‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1174367/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1402631/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 2:5401653/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:3340109/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 2:292735/1‑49 GATCACTCTGCCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 2:100320/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:3248440/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:449627/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 2:176933/1‑50 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:143606/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:1845748/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:1665662/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1400273/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1067339/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 2:4482186/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 2:1009234/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 2:4646236/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 2:3963888/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:5593156/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:311419/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:5217029/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:2355424/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:175050/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:763568/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 2:2326052/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2557956/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:3169946/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:2924655/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:193567/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:3352414/1‑48 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |