| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 115 [0] | [0] 116 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 112 (0.770) | 54/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 115 total aligned reads displayed.
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15340‑15435 | aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:682252‑M1/1‑49 (MQ=255)aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCGCTCt > 2:200902‑M1/1‑49 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCta > 1:4928793‑M1/1‑48 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCt < 1:232938‑M1/49‑2 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCt < 1:3509004‑M1/49‑2 (MQ=255) ggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtac < 1:5482945‑M1/50‑4 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 2:5230754‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 2:5654703‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:556212‑M1/50‑6 (MQ=255) gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCcacct > 1:4461696‑M1/1‑44 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:2507169‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 2:4795016‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc > 1:4816840‑M1/1‑43 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaa < 2:570184‑M1/50‑9 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCttcctcaat > 2:2640846‑M1/1‑41 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCtcactcaat > 2:3777302‑M1/1‑41 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:5121504‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 2:1042109‑M1/50‑10 (MQ=255) tGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCAATCttcctccatg > 2:1148004‑M1/1‑40 (MQ=255) tGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacccccatg > 2:2732522‑M1/1‑40 (MQ=255) tGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAACAACCtacctcaaat > 2:5502439‑M1/1‑40 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtaccccaatgt > 2:1985476‑M1/1‑39 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctccatgt > 1:3005083‑M1/1‑39 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:5251480‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgt < 2:4795410‑M1/49‑12 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgt < 1:3549352‑M1/49‑12 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctccatgtgt > 1:674273‑M1/1‑37 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 2:2284955‑M1/50‑14 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:2373873‑M1/50‑14 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCtacctccatgtgta > 1:517354‑M1/1‑36 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 2:4278951‑M1/50‑15 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtccccccatgtgtat > 2:2912721‑M1/1‑34 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 2:2459456‑M1/50‑17 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaatgtgtatca > 1:1848314‑M1/1‑33 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtaccccaatgtgtatca > 2:5632105‑M1/1‑33 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGATGACTCtacctcaaagtgtaaca > 2:5481496‑M1/1‑33 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:2836713‑M1/50‑19 (MQ=255) gCGAGCACCTGTAAAGTGGCGGGGATCACTCtacccccaagtgtatcac > 1:1891836‑M1/1‑31 (MQ=255) gCGAGCACCTGTAAAGTGGCGGGGAGCACCCtaccccaatgtgtattac > 1:4085392‑M1/1‑31 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctccctgtgtatcacaa > 2:3178028‑M1/1‑29 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctccatgtgtatcacaa > 1:5468813‑M1/1‑29 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 2:5686547‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 2:3516400‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 1:2958491‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACCCtacctccatgtgtatcacaa > 1:5032830‑M1/1‑29 (MQ=255) aGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaata < 2:4865699‑M1/50‑23 (MQ=255) gCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatat < 1:252248‑M1/50‑24 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:3547175‑M1/50‑26 (MQ=255) cTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccat < 1:5404173‑M1/50‑28 (MQ=255) cTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccat < 2:4301563‑M1/50‑28 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatatt < 2:5598860‑M1/50‑31 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:4648215‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 2:4737364‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 2:5255191‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtaccacaatgtgtatcacaatatccatatt < 2:2013292‑M1/50‑31 (MQ=255) tAAAGTGGCGGGGAGCACTCtacctcaatgtgtatcacaaaatccatatt > 2:402237‑M1/1‑20 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:1404753‑M1/50‑33 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct > 2:1185399‑M1/1‑18 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:1689255‑M1/50‑33 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattc < 1:2939052‑M1/49‑32 (MQ=255) aGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctt < 2:4961662‑M1/50‑34 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 2:1883806‑M1/50‑35 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 2:4070536‑M1/50‑35 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatgtccatattctttg < 1:5113164‑M1/50‑36 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg < 1:3510288‑M1/50‑36 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:1082806‑M1/1‑14 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 2:729351‑M1/1‑14 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:3821572‑M1/1‑14 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:4265954‑M1/1‑14 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:3078278‑M1/49‑37 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1174367‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1402631‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 2:5401653‑M1/1‑11 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:3340109‑M1/1‑9 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 2:292735‑M1/1‑9 (MQ=255) gATCACTCtgcctcaatgtgtatcacaatatccatattctttgtggggga < 2:100320‑M1/50‑43 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:3248440‑M1/50‑43 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:449627‑M1/50‑43 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 2:176933‑M1/1‑7 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 1:143606‑M1/1‑7 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 1:1845748‑M1/50‑45 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 1:1665662‑M1/50‑45 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:1400273‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:1067339‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 2:4482186‑M1/50‑45 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 2:1009234‑M1/1‑6 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 2:4646236‑M1/1‑5 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 2:3963888‑M1/1‑5 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:5593156‑M1/1‑4 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:311419‑M1/1‑3 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:5217029‑M1/1‑3 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:2355424‑M1/50‑48 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:175050‑M1/50‑48 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:763568‑M1/50‑48 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 2:2326052‑M1/50‑48 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:2557956‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 2:3169946‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 2:2924655‑M1/1‑2 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:193567‑M1/1‑1 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 2:3352414‑M1/1‑1 (MQ=255) | AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15340‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |