| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 115 [0] | [0] 116 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 112 (0.770) | 54/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 116 total aligned reads displayed.
CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 | gggtgcgttgaagatatgcgagcacctgtaaagtggcgggggtcactcTa > 1:4928793‑M2/49‑50 (MQ=255)gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:3509004‑M2/1‑1 (MQ=255)gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:232938‑M2/1‑1 (MQ=255) ggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTAc < 1:5482945‑M2/3‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 1:556212‑M2/5‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 2:5654703‑M2/5‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 2:5230754‑M2/5‑1 (MQ=255) gcgttgaagatatgcgagcacctgtaaagtggcgggggtcactcCACCt > 1:4461696‑M2/45‑49 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 2:4795016‑M2/6‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 1:2507169‑M2/6‑1 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCaa < 2:570184‑M2/8‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcgggggtcactcTTCCTCAAt > 2:2640846‑M2/42‑50 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcgggggacactcTCACTCAAt > 2:3777302‑M2/42‑50 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:5121504‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:991919‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 2:4844992‑M2/9‑1 (MQ=255) tgaagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCAAtg > 1:4935078‑M2/41‑50 (MQ=255) tgaagatatgcgagcacctgtaaagtggcgggggtcaatcTTCCTCCAtg > 2:1148004‑M2/41‑50 (MQ=255) tgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCCata > 1:2006126‑M2/41‑49 (MQ=255) tgaagatatgcgagcacctgtaaagtggcggggaacaaccTACCtcaaat > 2:5502439‑M2/41‑48 (MQ=255) gaagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCAAtgt > 2:1985476‑M2/40‑50 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCCAtgt > 1:3005083‑M2/40‑50 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 2:3250808‑M2/10‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggggcactcTACCCCCAtgtg > 2:2518220‑M2/39‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:5251480‑M2/12‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 2:4795410‑M2/11‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 1:3549352‑M2/11‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCCATgtgt > 1:674273‑M2/38‑50 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 2:2284955‑M2/13‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:2373873‑M2/13‑1 (MQ=255) gatatgcgagcacctgtaaagtggcgggggtcacccTACCTCCATGTGTa > 1:517354‑M2/37‑50 (MQ=255) gatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTa < 2:4278951‑M2/14‑1 (MQ=255) gatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTa < 1:2584157‑M2/14‑1 (MQ=255) tatgcgagcacctgtaaagtggcgggggtcactcTCCCCCCATGTGTAt > 2:2912721‑M2/35‑49 (MQ=255) tatgcgagcacctgtaaagtggcggggatgacacTACCTCAAAGTGGAt > 1:4182743‑M2/35‑49 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 2:2459456‑M2/16‑1 (MQ=255) atgcgagcacctgtaaagtggcgggggtcactcTACCTCAATGTGTATca > 1:1848314‑M2/34‑50 (MQ=255) atgcgagcacctgtaaagtggcgggggtcactcTACCCCAATGTGTATca > 2:5632105‑M2/34‑50 (MQ=255) atgcgagcacctgtaaagtggcggggatgactcTACCTCAAAGTGTAAca > 2:5481496‑M2/34‑50 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:2836713‑M2/18‑1 (MQ=255) gcgagcacctgtaaagtggcggggatcactcTACCCCCAAGTGTATcac > 1:1891836‑M2/32‑49 (MQ=255) gcgagcacctgtaaagtggcggggagcacccTACCCCAATGTGTATtac > 1:4085392‑M2/32‑49 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCCCTGTGTATCACaa > 2:3178028‑M2/30‑49 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCCATGTGTATCACaa > 1:5468813‑M2/30‑49 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 2:3516400‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 2:5686547‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 1:2958491‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcacccTACCTCCATGTGTATCACaa > 1:5032830‑M2/30‑49 (MQ=255) gcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAatat < 1:252248‑M2/23‑1 (MQ=255) cacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATc < 1:5460680‑M2/24‑1 (MQ=255) acctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATcc < 1:3547175‑M2/25‑1 (MQ=255) ctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCat < 1:5404173‑M2/27‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 2:5255191‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 2:4128333‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:4648215‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 2:4737364‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATAtt < 2:5598860‑M2/30‑1 (MQ=255) taaagtggcggggatcactcTACCACAATGTGTATCACAATATCCATAtt < 2:2013292‑M2/30‑1 (MQ=255) taaagtggcggggagcactcTACCTCAATGTGTATCACAAAATCCATAtt > 2:402237‑M2/21‑50 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTc < 1:2939052‑M2/31‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt > 2:1185399‑M2/19‑50 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 1:1689255‑M2/32‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 1:1404753‑M2/32‑1 (MQ=255) agtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCtt < 2:4961662‑M2/33‑1 (MQ=255) gtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCttt < 2:1883806‑M2/34‑1 (MQ=255) gtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCttt < 2:4070536‑M2/34‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATGTCCATATTCTTtg < 1:5113164‑M2/35‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg < 1:3510288‑M2/35‑1 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 2:729351‑M2/15‑50 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:1082806‑M2/15‑50 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:4265954‑M2/15‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:3078278‑M2/36‑1 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:1174367‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:1402631‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 2:5401653‑M2/12‑50 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 2:292735‑M2/10‑49 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:3340109‑M2/10‑49 (MQ=255) gatcactcTGCCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 2:100320‑M2/42‑1 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:3248440‑M2/42‑1 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:449627‑M2/42‑1 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 1:143606‑M2/8‑50 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 2:176933‑M2/8‑50 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 2:1851094‑M2/8‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 1:1665662‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 1:1845748‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:1400273‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:1067339‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 2:4482186‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 2:1009234‑M2/7‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 2:4646236‑M2/6‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 2:3963888‑M2/6‑50 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:3302127‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:2355424‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:763568‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:175050‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 2:2326052‑M2/47‑1 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 2:3169946‑M2/3‑49 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 2:2924655‑M2/3‑49 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:843450/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:911313/1‑47 (MQ=255) | CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |