| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 147 [0] | [0] 146 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 146 (0.980) | 71/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 146 total aligned reads displayed.
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:4328475/50‑1CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 2:2922990/50‑1CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 2:5251571/1‑50CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:626165/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 2:230007/50‑1 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 2:4216961/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 2:1093627/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 2:2798406/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:3723658/50‑1 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGA < 2:1477769/50‑1 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGA < 2:5181193/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:1644019/50‑1 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG < 2:2118968/50‑1 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG < 1:2816071/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 2:4959409/50‑1 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCG < 1:282546/50‑1 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 2:1065199/1‑49 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGA < 1:1749502/50‑1 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:1449416/1‑48 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:2848990/1‑48 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 2:2315685/1‑48 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 2:3854748/1‑50 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:2257034/1‑50 AACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGC > 1:3502322/1‑50 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:3127584/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:2870737/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC > 1:4943099/1‑50 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 2:1786050/50‑1 CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG < 2:4845737/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 2:1258159/1‑50 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 2:4325745/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 2:5029682/1‑49 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 2:1271499/1‑49 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 1:3873815/1‑49 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 2:2231888/1‑50 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:1616399/49‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:4296051/49‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:4206634/1‑49 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 2:691194/1‑49 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACT < 1:4060612/50‑1 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 2:702418/1‑49 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:882154/49‑1 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:5566926/1‑49 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:3259168/49‑1 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:594354/1‑50 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTAC < 2:2982172/49‑1 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:3203664/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:1010379/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 2:5585082/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC < 1:2372168/49‑1 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC < 1:2632386/49‑1 TGTTAGCCGGATAAGGCACCGCTCTGAAGCGAGCCGCTCAATACTACAC < 1:5560942/49‑1 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT > 1:5437506/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:244257/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 2:1921466/1‑50 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 1:4465681/49‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 2:3170217/49‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 2:1327219/1‑49 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 2:4554372/49‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 2:536532/1‑49 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:5073485/49‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:2802648/49‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:3848645/1‑50 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:241182/1‑50 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:4769791/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 2:785707/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 2:269878/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:1374365/1‑48 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:1213771/1‑48 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:4456806/1‑48 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:1986360/1‑48 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:2949804/1‑48 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:5068211/1‑47 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:1108728/1‑47 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:4128676/1‑46 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:3276055/1‑46 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT < 1:4408546/50‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT < 1:3790892/50‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA < 1:5498297/49‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA < 2:3646098/49‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA < 2:1719901/49‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 2:3044495/1‑45 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:1762826/50‑1 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:757444/50‑1 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:4198238/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA < 2:2734230/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA < 2:1758227/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA < 1:221680/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA < 2:1047363/50‑1 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG < 1:573687/50‑1 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG < 1:2538620/50‑1 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 2:4797331/1‑50 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 1:3608884/1‑50 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:130203/50‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA > 2:1779492/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC < 1:2737759/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 2:84591/1‑50 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG < 2:1030360/50‑1 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 2:1886053/1‑49 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:3451369/1‑49 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |