| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 147 [0] | [0] 146 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 146 (0.980) | 71/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 146 total aligned reads displayed.
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 | caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt < 1:4328475‑M2/1‑1 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt < 2:2922990‑M2/1‑1 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 2:5251571‑M2/50‑50 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:626165‑M2/50‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 2:230007‑M2/2‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 2:4216961‑M2/2‑1 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 2:1093627‑M2/3‑1 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 2:2798406‑M2/3‑1 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 1:3723658‑M2/3‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 2:1477769‑M2/4‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 2:5181193‑M2/4‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:1644019‑M2/5‑1 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg < 2:2118968‑M2/6‑1 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg < 1:2816071‑M2/6‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 2:4959409‑M2/7‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 2:1065199‑M2/43‑49 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCg < 1:282546‑M2/8‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:1449416‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:2848990‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 2:2315685‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 1:1749502‑M2/9‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 2:3854748‑M2/41‑50 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:2257034‑M2/41‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:3502322‑M2/40‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:3127584‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:2870737‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:4943099‑M2/39‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 2:1786050‑M2/12‑1 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg < 2:4845737‑M2/13‑1 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 2:1258159‑M2/36‑50 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 2:4325745‑M2/35‑49 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 2:5029682‑M2/35‑49 (MQ=255) ggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc > 2:1271499‑M2/34‑49 (MQ=255) ggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:3873815‑M2/34‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 2:2231888‑M2/33‑50 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:1616399‑M2/17‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:4296051‑M2/17‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:4206634‑M2/32‑49 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 2:691194‑M2/32‑49 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:4060612‑M2/22‑1 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 2:702418‑M2/27‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:882154‑M2/23‑1 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:5566926‑M2/27‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:3259168‑M2/23‑1 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtactac < 2:2982172‑M2/24‑1 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:594354‑M2/26‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:3203664‑M2/25‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:1010379‑M2/25‑50 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac < 1:2632386‑M2/26‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac < 1:2372168‑M2/26‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 2:5585082‑M2/24‑50 (MQ=255) tgttagccggataaggcaccgctCTGAAGCGAGCCGCTCAATACTacac < 1:5560942‑M2/26‑1 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt > 1:5437506‑M2/23‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:244257‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 2:1921466‑M2/22‑50 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:4465681‑M2/30‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 2:3170217‑M2/30‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 2:1327219‑M2/20‑49 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 2:4554372‑M2/30‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 2:536532‑M2/20‑49 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttttt < 1:5073485‑M2/31‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttttt < 1:2802648‑M2/31‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 2:3848645‑M2/18‑50 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 2:241182‑M2/18‑50 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:4769791‑M2/33‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 2:1374365‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:1213771‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:4456806‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 2:269878‑M2/35‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 2:785707‑M2/35‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1986360‑M2/14‑48 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:2949804‑M2/14‑48 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1108728‑M2/13‑47 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:5068211‑M2/13‑47 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:4128676‑M2/12‑46 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:3276055‑M2/12‑46 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 2:3044495‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:5498297‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 2:3646098‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 2:1719901‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:3790892‑M2/40‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:4408546‑M2/40‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:4198238‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:1762826‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:757444‑M2/41‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 2:2734230‑M2/42‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 2:1047363‑M2/42‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 2:1758227‑M2/42‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:221680‑M2/42‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:573687‑M2/43‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:2538620‑M2/43‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 2:4797331‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:3608884‑M2/7‑50 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc < 1:130203‑M2/45‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 2:1779492‑M2/5‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:2737759‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 2:84591‑M2/4‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg < 2:1030360‑M2/48‑1 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 2:1886053‑M2/2‑49 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:3451369‑M2/2‑49 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |