| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 147 [0] | [0] 146 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 146 (0.980) | 71/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 147 total aligned reads displayed.
GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819726‑819823 | cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt < 2:2922990‑M1/50‑2 (MQ=255) cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt > 2:5251571‑M1/1‑49 (MQ=255) cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt < 1:4328475‑M1/50‑2 (MQ=255) cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt > 1:3739420‑M1/1‑49 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 2:4216961‑M1/50‑3 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 2:230007‑M1/50‑3 (MQ=255) ggcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg < 2:2267905‑M1/50‑4 (MQ=255) gcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttga < 2:1477769‑M1/50‑5 (MQ=255) gcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttga < 2:5181193‑M1/50‑5 (MQ=255) gcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg > 1:4052638‑M1/1‑46 (MQ=255) cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaa < 1:1644019‑M1/50‑6 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag > 1:5015541‑M1/1‑44 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 2:2118968‑M1/50‑7 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:5504909‑M1/50‑7 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:2816071‑M1/50‑7 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 2:4959409‑M1/50‑8 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcg < 1:282546‑M1/50‑9 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 2:1065199‑M1/1‑42 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga < 1:1749502‑M1/50‑10 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:2848990‑M1/1‑41 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:1449416‑M1/1‑41 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag > 2:3854748‑M1/1‑40 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag > 1:5663594‑M1/1‑40 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag > 1:2257034‑M1/1‑40 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 2:1786050‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:2870737‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:3127584‑M1/50‑13 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg < 1:5079055‑M1/50‑14 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg > 2:1018932‑M1/1‑37 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg < 2:4845737‑M1/50‑14 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct < 1:3566395‑M1/50‑16 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 2:1767240‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 2:1258159‑M1/1‑35 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 2:1049832‑M1/1‑34 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 2:5029682‑M1/1‑34 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:1616399‑M1/49‑18 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:4296051‑M1/49‑18 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 2:691194‑M1/1‑31 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 1:4206634‑M1/1‑31 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact < 1:4060612‑M1/50‑23 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact < 2:1817201‑M1/50‑23 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta < 1:3259168‑M1/49‑24 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 2:702418‑M1/1‑26 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca > 1:3305824‑M1/1‑25 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca > 1:594354‑M1/1‑25 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:1010379‑M1/1‑24 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:3203664‑M1/1‑24 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact > 2:5585082‑M1/1‑23 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac < 1:2372168‑M1/49‑27 (MQ=255) tGTTAGCCGGATAAGGCACCGCTctgaagcgagccgctcaatactacac < 1:5560942‑M1/49‑27 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt > 1:5437506‑M1/1‑22 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 2:1320654‑M1/49‑29 (MQ=255) tAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 2:438628‑M1/1‑20 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 2:536532‑M1/1‑19 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt < 2:4554372‑M1/49‑31 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 2:1327219‑M1/1‑19 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttt < 1:2802648‑M1/49‑32 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:4769791‑M1/50‑34 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 2:241182‑M1/1‑17 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:4614770‑M1/1‑16 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:4442336‑M1/1‑16 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca < 2:785707‑M1/50‑36 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:1213771‑M1/1‑15 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:4456806‑M1/1‑15 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:2949804‑M1/1‑13 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:1986360‑M1/1‑13 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 2:395222‑M1/1‑13 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 2:2336602‑M1/1‑12 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:5068211‑M1/1‑12 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:1108728‑M1/1‑12 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:4128676‑M1/1‑11 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 2:2793685‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 1:3790892‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagaga < 1:2477536‑M1/49‑40 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagaga < 2:3646098‑M1/49‑40 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 2:3044495‑M1/1‑10 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:2690585‑M1/1‑10 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:4198238‑M1/50‑42 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:1762826‑M1/50‑42 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:757444‑M1/50‑42 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:688936‑M1/50‑42 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 2:2024539‑M1/50‑43 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 2:2734230‑M1/50‑43 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 2:1758227‑M1/50‑43 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 1:221680‑M1/50‑43 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag < 1:573687‑M1/50‑44 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag < 1:2538620‑M1/50‑44 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 2:3691471‑M1/1‑6 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt < 2:3137641‑M1/50‑45 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 2:4797331‑M1/1‑6 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 1:3608884‑M1/1‑6 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:130203‑M1/50‑46 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca > 2:110511‑M1/1‑4 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 2:1680296‑M1/50‑48 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:2737759‑M1/50‑48 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac > 2:84591‑M1/1‑3 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 2:294439‑M1/1‑2 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg < 2:1030360‑M1/50‑49 (MQ=255) tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 2:1886053‑M1/1‑1 (MQ=255) tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:3451369‑M1/1‑1 (MQ=255) | GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819726‑819823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |