| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 209 [0] | [0] 202 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 201 (1.350) | 80/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
Only 100 of 201 total aligned reads displayed.
TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509514‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 2:5531138/1‑49 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 2:52915/1‑50 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 2:3284343/1‑50 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAA < 2:661842/49‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA < 1:1784432/49‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA < 2:3569165/49‑1 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 2:3771214/1‑49 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:2121470/1‑49 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:700485/1‑49 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:4426505/1‑49 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:3001849/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA < 2:179810/49‑1 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA > 1:5628004/1‑49 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA < 2:4389835/50‑1 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:1133899/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:723666/1‑49 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:1619223/1‑50 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:44674/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA < 2:2603379/50‑1 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAAC < 1:1196230/49‑1 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAAC < 2:3560003/49‑1 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 2:611400/1‑49 CTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA > 1:2751788/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:4279847/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 2:4822921/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:4217693/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:3746130/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:1889468/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACC < 2:932877/48‑1 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACC < 2:1972335/48‑1 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 2:3938895/1‑50 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 2:1566336/1‑50 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 2:2222009/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG > 2:4598071/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:4893227/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 2:506536/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 2:5200686/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT < 2:3353374/48‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA < 2:4281/47‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAAAACCCTT < 1:2982800/49‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGC < 1:5422538/50‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 2:3955958/1‑50 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:791263/1‑50 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 2:2154449/1‑50 CCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGC < 1:3219332/50‑1 CCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGC < 2:3204740/50‑1 CCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGC < 1:4382975/50‑1 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:423857/1‑50 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:2476851/50‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC < 1:4572404/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA < 1:4044573/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA < 2:204629/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA > 2:2118412/1‑50 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA < 2:4021040/50‑1 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:1971340/1‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 2:4764959/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 2:36496/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:4961712/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:1436435/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:329512/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:3126540/1‑50 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG < 1:5057546/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT < 1:3833586/50‑1 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG > 2:129502/1‑50 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG < 2:5380151/50‑1 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 1:5666167/1‑50 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 2:4444248/50‑1 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 2:2665407/1‑50 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 2:2906407/1‑50 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:2410793/1‑49 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:2436818/1‑49 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:260887/1‑49 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:899518/1‑49 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:1078587/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT < 2:2423267/50‑1 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:5501056/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT < 1:3470616/50‑1 TATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC > 2:3090054/1‑50 TATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC > 2:1868180/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:3153621/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:5509062/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:4364393/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 2:4212737/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 2:1200200/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:2181641/49‑1 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:946398/49‑1 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:3557538/1‑49 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA < 1:2889247/50‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:4766281/1‑50 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGGGTTTAATCGTCA > 2:4894513/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:4642800/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 2:2534205/1‑50 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTG < 1:2159163/50‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTG < 2:5325856/50‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:4324118/1‑49 TTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 2:3373486/1‑48 TTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:5195458/1‑48 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGA < 1:3257722/49‑1 TCTAAACAAAAACACCATCGCGCAGGCAATGGTGTTTAATCGTCATTGA < 2:3803291/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 2:1079874/1‑49 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509514‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |