| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 197 [0] | [0] 199 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 185 (1.270) | 76/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 197 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 2:3774452/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 2:4236107/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 2:2757759/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 2:5538199/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:3867155/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 2:970257/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:5225397/1‑49 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:751432/1‑49 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 2:153920/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 2:1006273/48‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:3814367/48‑1 GGCAATCCTGATGGTCATTGTCCAAACGCTTACTATTGGTTATATTTCAC > 2:2940012/1‑50 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 2:902627/50‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:456707/1‑49 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 2:1173452/1‑49 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC < 1:896752/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACaa > 2:386653/1‑48 AATCCTTATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 2:4478723/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:956899/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 2:1750677/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 2:2693733/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:1820386/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 1:2643615/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT > 2:77330/1‑49 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 2:2177618/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 2:5131181/49‑1 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:3984213/1‑50 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:4118143/1‑50 GATGGTCATTGTCCCAACTCTTACTATTGGTTATATTTCACCACTCATTG > 1:1695095/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:5025762/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC < 2:3458441/50‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:1144034/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 2:1676603/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 2:5235042/48‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 2:4299212/48‑1 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 2:473463/1‑50 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 1:3521891/1‑50 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 2:4598647/1‑50 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:40308/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 2:2982188/1‑49 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 2:1036313/50‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:3180933/50‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:4406859/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:700374/50‑1 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC > 1:272524/1‑50 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 2:4420630/50‑1 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC > 1:2991957/1‑50 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC > 2:3154454/1‑50 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT > 2:3833140/1‑50 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC < 1:4188152/49‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 2:689314/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 2:2414752/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT < 2:502806/49‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 2:2148911/49‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:1151115/50‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 2:4992695/50‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:3795989/1‑50 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 2:927718/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 2:419264/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 2:3524498/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 2:597778/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 2:1970747/50‑1 GCTTACTATTGGTTATATTCCACCACTCATTGCCACATTCCTTGTGTATA < 1:4377364/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:5262018/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 2:5631660/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:2383359/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:2832285/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:1500910/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:3688392/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 2:3894276/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 2:3298364/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG < 1:3228147/50‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:2266386/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG < 1:3787896/50‑1 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:5131230/1‑50 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 2:2439527/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 2:4767270/50‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 1:4617085/50‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:345598/49‑1 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT > 1:2530427/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:3108498/50‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:4437229/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 2:1339271/49‑1 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:5655710/1‑50 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:3088882/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 2:4944801/1‑49 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:4789431/49‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:996027/1‑49 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:5410930/1‑49 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:2095196/49‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:3596236/49‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 2:1415526/1‑49 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:3138449/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 2:5597892/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:5118197/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 2:2975557/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 2:186390/49‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 1:2905717/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 2:5414699/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 2:3668158/49‑1 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |