| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 197 [0] | [0] 199 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 185 (1.270) | 76/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 197 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 2:3774452‑M1/1‑50 (MQ=255) tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 2:4236107‑M1/1‑49 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 2:2757759‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 2:5538199‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:3867155‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 2:970257‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:5225397‑M1/1‑47 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:751432‑M1/1‑47 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 2:153920‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 2:1006273‑M1/48‑2 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 1:3814367‑M1/48‑2 (MQ=255) ggCAATCCTGATGGTCATTGTCCAAACGCTTACTATTGGTTATATttcac > 2:2940012‑M1/1‑45 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 2:902627‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 1:456707‑M1/1‑44 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 2:1173452‑M1/1‑44 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:896752‑M1/49‑6 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacaa > 2:386653‑M1/1‑43 (MQ=255) aaTCCTTATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 2:4478723‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:956899‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac < 2:1750677‑M1/50‑9 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 2:2693733‑M1/50‑10 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 1:1820386‑M1/50‑10 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:2643615‑M1/50‑11 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 2:77330‑M1/1‑40 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 2:2177618‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 2:5131181‑M1/49‑12 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:3984213‑M1/1‑37 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:4118143‑M1/1‑37 (MQ=255) gATGGTCATTGTCCCAACTCTTACTATTGGTTATATttcaccactcattg > 1:1695095‑M1/1‑36 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:5025762‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 2:3458441‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:1144034‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 2:1676603‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 2:5235042‑M1/48‑14 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 2:4299212‑M1/48‑14 (MQ=255) ggTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 2:473463‑M1/1‑33 (MQ=255) ggTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:3521891‑M1/1‑33 (MQ=255) ggTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 2:4598647‑M1/1‑33 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccac < 1:40308‑M1/50‑19 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 2:2982188‑M1/1‑32 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 2:1036313‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:3180933‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:4406859‑M1/50‑20 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:700374‑M1/50‑22 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc > 1:272524‑M1/1‑28 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc < 2:4420630‑M1/50‑23 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:2991957‑M1/1‑27 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 2:3154454‑M1/1‑27 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct > 2:3833140‑M1/1‑26 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:4188152‑M1/49‑24 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 2:689314‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 2:2414752‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 2:502806‑M1/49‑25 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 2:2148911‑M1/49‑27 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 1:1151115‑M1/50‑29 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 2:4992695‑M1/50‑29 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:3795989‑M1/1‑20 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 2:927718‑M1/50‑31 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 2:419264‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 2:3524498‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 2:597778‑M1/50‑32 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 2:1970747‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATtccaccactcattgccacattccttgtgtata < 1:4377364‑M1/50‑33 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:5262018‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 2:5631660‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:2383359‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:2832285‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:1500910‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:3688392‑M1/1‑17 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 2:3894276‑M1/1‑15 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagcc < 2:3298364‑M1/49‑36 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag < 1:3228147‑M1/50‑38 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag > 1:2266386‑M1/1‑13 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag < 1:3787896‑M1/50‑38 (MQ=255) tATTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:5131230‑M1/1‑12 (MQ=255) tATTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 2:2439527‑M1/1‑12 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca < 2:4767270‑M1/50‑41 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca < 1:4617085‑M1/50‑41 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:345598‑M1/49‑40 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:2530427‑M1/1‑8 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt < 1:3108498‑M1/50‑44 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:4437229‑M1/1‑7 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccatt < 2:1339271‑M1/49‑43 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:5655710‑M1/1‑5 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:3088882‑M1/1‑5 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 2:4944801‑M1/1‑4 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:4789431‑M1/49‑46 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 1:996027‑M1/1‑4 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 1:5410930‑M1/1‑4 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:2095196‑M1/49‑46 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:3596236‑M1/49‑46 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 2:1415526‑M1/1‑4 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:3138449‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 2:5597892‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 1:5118197‑M1/49‑47 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 2:2975557‑M1/49‑47 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 2:186390‑M1/49‑47 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:2905717‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 2:5414699‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 2:3668158‑M1/49‑49 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |