| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 197 [0] | [0] 199 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 185 (1.270) | 76/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 199 total aligned reads displayed.
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGG > NC_000913/2336584‑2336682 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:3800515‑M2/50‑50 (MQ=255) gatggcaatcctgatggtcattgtcccaacgcttactattggttatattt > 2:5538199‑M2/49‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatattt < 2:970257‑M2/2‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatattt < 2:3882526‑M2/2‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcacc < 2:902627‑M2/6‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac > 2:4264070‑M2/45‑49 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 2:2165205‑M2/5‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 1:735563‑M2/7‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 1:2533495‑M2/7‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca > 1:5557933‑M2/44‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt < 1:533241‑M2/9‑1 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt < 1:1820386‑M2/9‑1 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 2:77330‑M2/41‑49 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCa < 2:4506426‑M2/11‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt > 1:4615110‑M2/39‑50 (MQ=255) tgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt > 1:3107703‑M2/38‑50 (MQ=255) tgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt > 1:4118143‑M2/38‑50 (MQ=255) gatggtcattgtcccaactcttactattggttatatTTCACCACTCATTg > 1:1695095‑M2/37‑50 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt < 2:5235042‑M2/13‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt < 2:2024095‑M2/13‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTg < 1:3175743‑M2/14‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc < 2:3458441‑M2/15‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:1144034‑M2/36‑50 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGcc < 1:2675355‑M2/16‑1 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 2:2982188‑M2/33‑49 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 1:989689‑M2/33‑49 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca < 1:4406859‑M2/19‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt < 2:3854155‑M2/21‑1 (MQ=255) attgtcccaacgcgtgctattggttatatTTCACCACACATTGCCACAtt < 2:4949188‑M2/21‑1 (MQ=255) ttgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTc > 2:2942010‑M2/29‑50 (MQ=255) tgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc > 2:3154454‑M2/28‑50 (MQ=255) tgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc > 1:846502‑M2/28‑50 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:4188152‑M2/23‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:3112240‑M2/23‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:5125333‑M2/23‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 2:1515579‑M2/27‑50 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 2:1373215‑M2/27‑50 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 1:4810561‑M2/27‑50 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 2:4332282‑M2/27‑50 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt < 2:4426118‑M2/25‑1 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt < 2:689314‑M2/25‑1 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt < 1:3831254‑M2/24‑1 (MQ=255) cccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg > 2:1847767‑M2/25‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt < 1:5240600‑M2/27‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg < 1:1151115‑M2/28‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:2223354‑M2/23‑50 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 2:3831816‑M2/29‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 2:927718‑M2/30‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:2522783‑M2/21‑50 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 2:597778‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:2771561‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 2:4706245‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 2:3524498‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:371372‑M2/31‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:5163548‑M2/19‑48 (MQ=255) gcttactattggttatatTCCACCACTCATTGCCACATTCCTTGTGtata < 1:4377364‑M2/32‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:1500910‑M2/18‑50 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 2:5631660‑M2/18‑50 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 1:90954‑M2/33‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 2:1941083‑M2/33‑1 (MQ=255) ttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 2:1275927‑M2/17‑50 (MQ=255) ttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 2:4999533‑M2/17‑50 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcc < 2:2382351‑M2/35‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcc < 2:3298364‑M2/35‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 2:5043961‑M2/15‑48 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccag > 2:1115549‑M2/14‑50 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccag < 1:3581687‑M2/37‑1 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcca < 1:5113149‑M2/36‑1 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 2:478112‑M2/13‑50 (MQ=255) tattggctatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 2:2727320‑M2/13‑50 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:3209715‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:681632‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 2:2478563‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:3682899‑M2/12‑49 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca < 2:2422652‑M2/40‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca > 1:3291478‑M2/11‑50 (MQ=255) gtttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt > 1:2848653‑M2/9‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTATGTATAGCCAGCCAtt > 2:1006099‑M2/9‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:379061‑M2/8‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:4437229‑M2/8‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 2:4194724‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 1:2308435‑M2/44‑1 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 2:411638‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 2:1015945‑M2/44‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 2:474276‑M2/6‑50 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttttt < 1:400192‑M2/46‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTa > 1:2934448‑M2/4‑50 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTa > 2:2929519‑M2/4‑50 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTa > 2:5597892‑M2/4‑50 (MQ=255) tTTCTCCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg < 1:3909608‑M2/49‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 2:1701133‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 2:3668158‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 2:1564114‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:3461079‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg > 2:5414699‑M2/2‑50 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg < 1:3001812‑M2/49‑1 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACgg > 2:5147179/1‑50 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACgg > 1:1917464/1‑50 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACgg > 1:478586/1‑50 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACgg > 1:4629123/1‑50 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGG > NC_000913/2336584‑2336682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |