| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 131 [0] | [0] 139 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 0 (0.000) | 104 (0.860) | 58/80 | 0.0 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
Only 100 of 163 total aligned reads displayed.
CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 2:4227223/1‑49CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG < 2:5340461/49‑1CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG < 1:2141050/49‑1 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:2185753/1‑47 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:2329907/1‑47 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:15393/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:1624582/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:1921391/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAA < 1:5208621/48‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAA < 2:1585454/48‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 1:3714155/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 2:3589834/1‑48 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:1686254/50‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 2:5496542/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 2:1075113/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 2:4455273/1‑50 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:3220532/1‑50 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 2:2973523/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:242059/1‑50 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 2:3348330/1‑49 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:3591414/1‑49 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACA < 1:3055408/50‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 2:1470179/1‑48 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCA < 2:4681134/50‑1 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCA < 2:2282039/50‑1 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGC < 2:4144351/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 1:1217455/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 1:4155828/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 2:629004/1‑48 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 2:3798451/50‑1 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 2:2515659/50‑1 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCG > 2:226061/1‑50 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT < 1:184282/50‑1 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 2:5628365/1‑50 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:4496567/1‑50 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:4662207/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:770155/1‑49 TTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG > 1:2681581/1‑49 CAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC > 1:3153787/1‑50 CAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAA < 2:3620648/49‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 2:10243/50‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC < 2:5094576/49‑1 GGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTG > 1:5153932/1‑50 GGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG < 1:5055146/50‑1 GTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:1646390/1‑49 TTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 2:2674985/1‑48 TGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:4683704/1‑47 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAG < 1:386412/49‑1 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCA > 2:499273/1‑48 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:2262222/50‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGA < 2:1136582/49‑1 CACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC > 1:3112352/1‑50 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG < 2:657687/50‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG > 2:2095586/1‑50 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG < 2:2035478/50‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC < 2:3877795/49‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC < 2:5048502/49‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC < 1:1022192/50‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC < 2:1634013/50‑1 TAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 2:3560070/1‑49 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 2:5053922/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:658293/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:3839556/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 1:2085568/49‑1 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 1:2793296/49‑1 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 2:1873204/49‑1 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCC < 2:2690610/48‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG < 1:66048/50‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG < 1:2767219/50‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:3288789/1‑49 GAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG > 2:2358603/1‑49 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAA < 1:4015423/50‑1 AGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAA < 2:2143924/50‑1 AGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAA > 1:1222212/1‑49 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA > 2:4861784/1‑50 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA > 1:4872734/1‑50 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATT < 2:4219722/50‑1 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:4865675/1‑49 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:339964/1‑49 TGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTA < 2:3188508/50‑1 TGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 2:3568318/1‑48 TGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 2:2337648/1‑48 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:5442252/1‑50 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCGAGGAAAAAATTAGCA < 2:3195102/50‑1 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 1:3728059/1‑50 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC > 1:1034776/1‑50 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC < 1:872366/50‑1 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC < 2:10826/50‑1 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 1:734584/1‑50 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC < 2:5422154/50‑1 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC < 1:3463700/50‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 2:1653657/50‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 2:940510/50‑1 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 1:435191/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG > 2:4163551/1‑50 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG > 2:37558/1‑50 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:5427878/50‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCGCCTGGC < 2:4526485/50‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC > 2:337469/1‑50 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < 1:5662660/50‑1 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |