BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,798,370	(TTC)_4→3	coding (124‑126/405 nt)	stpA ←	DNA‑binding transcriptional repressor StpA with RNA chaperone activity

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2798361	2798363	3	131 [0]	[0] 139	stpA	DNA‑binding transcriptional repressor StpA with RNA chaperone activity

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2798364 =	0 (0.000)	104 (0.860)	58/80	0.0	100%	coding (132/405 nt)	stpA	DNA‑binding transcriptional repressor StpA with RNA chaperone activity
*	?	NC_000913	= 2798360	0 (0.000)	104 (0.860)	58/80	0.0	100%	coding (136/405 nt)	stpA	DNA‑binding transcriptional repressor StpA with RNA chaperone activity

Only 100 of 131 total aligned reads displayed.

AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG  >  NC_000913/2798311‑2798408

agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg                                                  >  1:3271566/1‑50 (MQ=255)

 gCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGt                                                 <  1:5662660‑M2/50‑2 (MQ=255)

 gCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGt                                                 >  2:337469‑M2/1‑49 (MQ=255)

 gCCAGGCGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGt                                                 <  2:4526485‑M2/50‑2 (MQ=255)

  ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt                                                <  1:2040869‑M2/50‑3 (MQ=255)

  ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt                                                <  1:5427878‑M2/50‑3 (MQ=255)

  ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt                                                >  2:1661309‑M2/1‑48 (MQ=255)

  ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt                                                >  2:4163551‑M2/1‑48 (MQ=255)

   cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc                                               >  2:3709908‑M2/1‑47 (MQ=255)

   cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc                                               >  2:5700751‑M2/1‑47 (MQ=255)

   cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc                                               <  1:435191‑M2/50‑4 (MQ=255)

    aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct                                              <  2:1653657‑M2/50‑5 (MQ=255)

    aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct                                              <  2:940510‑M2/50‑5 (MQ=255)

     ggTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttctt                                             <  2:10826‑M2/50‑6 (MQ=255)

     ggTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttctt                                             <  1:3463700‑M2/50‑6 (MQ=255)

      gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc                                            >  1:1034776‑M2/1‑44 (MQ=255)

      gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc                                            <  1:872366‑M2/50‑7 (MQ=255)

      gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc                                            >  2:4169109‑M2/1‑44 (MQ=255)

       tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct                                           >  1:3728059‑M2/1‑43 (MQ=255)

       tGCTAATTTTTTCCTCGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct                                           <  2:3195102‑M2/50‑8 (MQ=255)

          tAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttca                                        <  2:3188508‑M2/50‑11 (MQ=255)

           aaTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcac                                       <  2:1036005‑M2/50‑12 (MQ=255)

            aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacg                                      <  1:5060231‑M2/50‑13 (MQ=255)

            aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcac                                       >  1:1822495‑M2/1‑38 (MQ=255)

            aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcac                                       >  1:4865675‑M2/1‑38 (MQ=255)

            aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttca                                        >  2:800849‑M2/1‑38 (MQ=255)

            aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttca                                        >  2:2337648‑M2/1‑38 (MQ=255)

            aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttca                                        >  2:2747831‑M2/1‑38 (MQ=255)

              tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtc                                    <  1:673142‑M2/50‑15 (MQ=255)

              tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtc                                    <  1:1558665‑M2/50‑15 (MQ=255)

               ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtct                                   <  2:2143924‑M2/50‑16 (MQ=255)

               ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtct                                   <  1:2586792‑M2/50‑16 (MQ=255)

                tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctt                                  <  1:4030456‑M2/50‑17 (MQ=255)

                tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctt                                  <  1:4015423‑M2/50‑17 (MQ=255)

                   ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct                               <  1:2767219‑M2/50‑20 (MQ=255)

                   ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct                               <  1:66048‑M2/50‑20 (MQ=255)

                   ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttc                                >  2:2358603‑M2/1‑31 (MQ=255)

                    cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              >  2:5053922‑M2/1‑30 (MQ=255)

                    cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              >  1:3839556‑M2/1‑30 (MQ=255)

                    cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              >  2:5253325‑M2/1‑30 (MQ=255)

                    cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              >  1:658293‑M2/1‑30 (MQ=255)

                    cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct                               >  1:5021183‑M2/1‑30 (MQ=255)

                    cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct                               >  1:3288789‑M2/1‑30 (MQ=255)

                     tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              <  2:1873204‑M2/49‑21 (MQ=255)

                     tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              <  1:2793296‑M2/49‑21 (MQ=255)

                      ggCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt                              <  2:3610116‑M2/48‑21 (MQ=255)

                       gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttag                           <  1:1022192‑M2/50‑24 (MQ=255)

                       gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttta                            >  2:3560070‑M2/1‑27 (MQ=255)

                       gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttta                            >  1:4361193‑M2/1‑27 (MQ=255)

                       gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttt                             >  1:5438993‑M2/1‑27 (MQ=255)

                       gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttt                             >  1:1508752‑M2/1‑27 (MQ=255)

                        cgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt                          <  2:3562323‑M2/50‑25 (MQ=255)

                        cgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt                          <  2:4932402‑M2/50‑25 (MQ=255)

                        cgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt                          <  2:657687‑M2/50‑25 (MQ=255)

                        cgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt                          >  2:2095586‑M2/1‑26 (MQ=255)

                         gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtg                         >  1:3112352‑M2/1‑25 (MQ=255)

                         gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtg                         >  2:4286823‑M2/1‑25 (MQ=255)

                         gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt                          <  2:5048502‑M2/49‑25 (MQ=255)

                         gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt                          <  2:3877795‑M2/49‑25 (MQ=255)

                          ctctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga                        <  1:2262222‑M2/50‑27 (MQ=255)

                           tctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga                        <  2:1136582‑M2/49‑27 (MQ=255)

                            ctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgac                       <  1:386412‑M2/49‑28 (MQ=255)

                             tGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa                     <  2:560011‑M2/50‑30 (MQ=255)

                             tGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa                     <  2:1368323‑M2/50‑30 (MQ=255)

                             tGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgac                       >  2:499273‑M2/1‑21 (MQ=255)

                              gCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac                    <  2:3813657‑M2/50‑31 (MQ=255)

                              gCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac                    <  1:355001‑M2/50‑31 (MQ=255)

                              gCCAGCTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac                    <  1:1034953‑M2/50‑31 (MQ=255)

                               ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaacc                   <  1:5055146‑M2/50‑32 (MQ=255)

                               ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac                    >  1:1646390‑M2/1‑19 (MQ=255)

                               ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa                     >  2:2674985‑M2/1‑19 (MQ=255)

                               ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa                     >  1:2238855‑M2/1‑19 (MQ=255)

                               ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgaca                      >  1:4683704‑M2/1‑19 (MQ=255)

                                cAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccc                  >  2:4506495‑M2/1‑18 (MQ=255)

                                cAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccc                  <  1:4727961‑M2/50‑33 (MQ=255)

                                cAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccc                  >  1:3233746‑M2/1‑18 (MQ=255)

                                 aGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccct                 <  2:10243‑M2/50‑34 (MQ=255)

                                  gTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctg                >  1:3153787‑M2/1‑16 (MQ=255)

                                  gTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctg                >  2:2021841‑M2/1‑16 (MQ=255)

                                  gTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccct                 <  2:5094576‑M2/49‑34 (MQ=255)

                                   ttCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctg                <  2:3620648‑M2/49‑35 (MQ=255)

                                     cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat             <  2:2127360‑M2/50‑38 (MQ=255)

                                     cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaa              >  1:2681581‑M2/1‑13 (MQ=255)

                                      aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt            <  1:184282‑M2/50‑39 (MQ=255)

                                      aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt            >  2:1611917‑M2/1‑12 (MQ=255)

                                      aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt            >  2:5628365‑M2/1‑12 (MQ=255)

                                      aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt            >  1:4496567‑M2/1‑12 (MQ=255)

                                      aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat             >  1:770155‑M2/1‑12 (MQ=255)

                                       cGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaattt           <  2:2590241‑M2/50‑40 (MQ=255)

                                        gctgctgctGttcttcttcacgtctttctttagtgacaaccctgaatttt          <  2:2515659‑M2/50‑41 (MQ=255)

                                        gctgctgctGttcttcttcacgtctttctttagtgacaaccctgaatttt          <  2:3798451‑M2/50‑41 (MQ=255)

                                         ctgctgctgttcttcttcacgtctttctttagtgacaaccctgaattttt         >  1:2368478‑M2/1‑9 (MQ=255)

                                          tgctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc        <  1:1217455‑M2/50‑43 (MQ=255)

                                          tgctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc        <  1:307953‑M2/50‑43 (MQ=255)

                                            ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc        >  2:3384265‑M2/1‑6 (MQ=255)

                                             tgctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag     <  2:4681134‑M2/50‑46 (MQ=255)

                                             tgctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag     <  2:2282039‑M2/50‑46 (MQ=255)

                                              gctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag     <  2:4144351‑M2/49‑46 (MQ=255)

                                               ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagc    >  1:758387‑M2/1‑3 (MQ=255)

                                                tgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcat  <  1:523989‑M2/50‑49 (MQ=255)

AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG  >  NC_000913/2798311‑2798408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`