| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 131 [0] | [0] 139 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 0 (0.000) | 104 (0.860) | 58/80 | 0.0 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
Only 100 of 139 total aligned reads displayed.
AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798315‑2798413 | gccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgt < 1:5662660‑M1/1‑1 (MQ=255)gccaggcgctaattttttcctggcgctctgccagttcacgctgctgctgt < 2:4526485‑M1/1‑1 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt > 2:4163551‑M1/49‑50 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt > 2:37558‑M1/49‑50 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt < 1:2040869‑M1/2‑1 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt > 2:1661309‑M1/49‑50 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc > 2:5700751‑M1/48‑50 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc > 2:3336239‑M1/48‑50 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc < 1:435191‑M1/3‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct < 2:940510‑M1/4‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct < 2:1653657‑M1/4‑1 (MQ=255) ggtgctaattttttcctggcgctctgccagttcacgctgctgctgttctt < 2:5422154‑M1/5‑1 (MQ=255) ggtgctaattttttcctggcgctctgccagttcacgctgctgctgttctt < 2:10826‑M1/5‑1 (MQ=255) ggtgctaattttttcctggcgctctgccagttcacgctgctgctgttctt < 1:3463700‑M1/5‑1 (MQ=255) gtgctaattttttcctggcgctctgccagttcacgctgctgctgttcttc > 1:1034776‑M1/45‑50 (MQ=255) gtgctaattttttcctggcgctctgccagttcacgctgctgctgttcttc < 1:872366‑M1/6‑1 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct > 1:3728059‑M1/44‑50 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc > 1:5442252‑M1/42‑50 (MQ=255) taattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa < 2:3188508‑M1/10‑1 (MQ=255) aattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc < 2:4219722‑M1/11‑1 (MQ=255) aattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc < 2:1036005‑M1/11‑1 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa > 2:800849‑M1/39‑48 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa > 2:2747831‑M1/39‑48 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa > 2:2337648‑M1/39‑48 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc > 1:1822495‑M1/39‑49 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc > 1:339964‑M1/39‑49 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACg < 1:5060231‑M1/12‑1 (MQ=255) ttttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGt > 1:4872734‑M1/38‑50 (MQ=255) tttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc < 1:673142‑M1/14‑1 (MQ=255) tttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc < 1:1558665‑M1/14‑1 (MQ=255) ttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct < 2:2143924‑M1/15‑1 (MQ=255) ttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct < 1:2586792‑M1/15‑1 (MQ=255) ttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc > 2:1099927‑M1/36‑49 (MQ=255) tttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt < 1:4030456‑M1/16‑1 (MQ=255) tttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt < 1:4015423‑M1/16‑1 (MQ=255) tttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct > 1:1222212‑M1/35‑49 (MQ=255) tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt > 2:3882970‑M1/33‑49 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:2767219‑M1/19‑1 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:66048‑M1/19‑1 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc > 2:2358603‑M1/32‑49 (MQ=255) ctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt > 2:5053922‑M1/31‑50 (MQ=255) ctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct > 1:5021183‑M1/31‑49 (MQ=255) tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 2:1873204‑M1/20‑1 (MQ=255) tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 1:2085568‑M1/20‑1 (MQ=255) ggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 2:3610116‑M1/20‑1 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTctttcttt > 1:5438993‑M1/28‑48 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTctttcttt > 1:1508752‑M1/28‑48 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa > 2:3560070‑M1/28‑49 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa > 1:4361193‑M1/28‑49 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg < 1:1022192‑M1/23‑1 (MQ=255) cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 2:3562323‑M1/24‑1 (MQ=255) cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 2:4932402‑M1/24‑1 (MQ=255) cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 2:2035478‑M1/24‑1 (MQ=255) cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt > 2:2095586‑M1/27‑50 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTg > 2:4286823‑M1/26‑50 (MQ=255) ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:2262222‑M1/26‑1 (MQ=255) ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa > 2:2416381‑M1/25‑50 (MQ=255) tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 2:1136582‑M1/26‑1 (MQ=255) tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:3770443‑M1/26‑1 (MQ=255) ctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc < 1:1658380‑M1/27‑1 (MQ=255) ctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc < 1:386412‑M1/27‑1 (MQ=255) tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc > 2:499273‑M1/22‑48 (MQ=255) gccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 2:3813657‑M1/30‑1 (MQ=255) gccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:355001‑M1/30‑1 (MQ=255) gccagctcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:1034953‑M1/30‑1 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa > 2:2674985‑M1/20‑48 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACa > 1:4683704‑M1/20‑47 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 2:4506495‑M1/19‑50 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 1:3233746‑M1/19‑50 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 1:5153932‑M1/19‑50 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc < 1:4727961‑M1/32‑1 (MQ=255) agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 2:10243‑M1/33‑1 (MQ=255) gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 2:5094576‑M1/33‑1 (MQ=255) gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg > 1:3153787‑M1/17‑50 (MQ=255) ttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 2:3620648‑M1/34‑1 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa > 1:2681581‑M1/14‑49 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:4662207‑M1/37‑1 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 2:1611917‑M1/13‑50 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 2:5628365‑M1/13‑50 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 1:770155‑M1/13‑49 (MQ=255) cgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 2:226061‑M1/12‑50 (MQ=255) cgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt < 2:2590241‑M1/39‑1 (MQ=255) gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 2:3798451‑M1/40‑1 (MQ=255) ctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt > 1:2368478‑M1/10‑50 (MQ=255) tgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:307953‑M1/42‑1 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 2:505119‑M1/42‑1 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 2:629004‑M1/7‑48 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 2:3384265‑M1/7‑48 (MQ=255) tgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 2:4681134‑M1/45‑1 (MQ=255) gctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 2:4144351‑M1/45‑1 (MQ=255) ctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGc > 1:758387‑M1/4‑49 (MQ=255) tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:523989‑M1/48‑1 (MQ=255) tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:3055408‑M1/48‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt < 2:2973523‑M1/50‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt < 2:5378866‑M1/50‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt > 1:3220532‑M1/1‑50 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt > 2:3348330‑M1/1‑49 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt > 2:2243815‑M1/1‑49 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt > 1:2169660‑M1/1‑49 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt > 2:1470179‑M1/1‑48 (MQ=255) | AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798315‑2798413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |