| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 132 [0] | [0] 138 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 124 (0.870) +GA |
61/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
Only 100 of 139 total aligned reads displayed.
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 2:3896778/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:103642/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 2:740102/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:608891/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:95083/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 2:2621862/1‑50 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:1785397/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:4257886/1‑50 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:2529676/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:1087256/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:841019/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 2:68874/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:2113989/50‑1 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 2:3346878/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 1:4758693/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 2:3885019/1‑50 TCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT > 1:1505634/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 2:4813807/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:1798162/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 2:2614249/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:2855079/48‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 2:2935189/47‑1 CAGCACTGACATCAATTTGTGTCACTCGCAGCGCATAGAACGCCATTTTG < 2:5231365/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:226235/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 2:4465778/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:1066403/1‑50 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:5371748/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 2:1724628/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:480308/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 2:3326403/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:13185/50‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG < 1:367296/50‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:542973/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 2:4428198/49‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 2:487905/50‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 2:3797151/1‑49 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 2:1934480/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 2:4111925/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 2:753517/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:2777075/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 2:136464/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:3209725/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:4515546/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 2:3368539/49‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 1:2451902/49‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:565052/1‑50 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:785453/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:5560911/1‑50 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:1158046/1‑50 TGTGTCACACGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 2:3410921/1‑49 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:3046883/1‑49 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 2:5064045/50‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:1729264/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:3455897/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 2:1414297/49‑1 TCACCCGCAGCGAATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:4077900/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 2:5161807/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 2:3175195/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:793603/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 2:4786972/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:3770835/49‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 2:1409518/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:605805/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 2:813296/50‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 2:3939796/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:1162847/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:2879633/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 2:1278142/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:2623681/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 1:4357038/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 2:5576615/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 2:2489994/1‑50 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:373519/1‑49 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 2:2794373/1‑49 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:3741604/50‑1 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:5654881/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 2:1703501/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 2:2075591/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 2:4219224/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 2:5279358/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 2:317572/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 1:5184962/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:3989858/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 2:2584128/50‑1 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 2:131015/50‑1 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:2194479/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:5233526/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:451111/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:1877178/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 2:2383857/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:2286193/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:2350755/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 2:5295518/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:3992795/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:4996265/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG < 2:3112255/50‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 2:4211226/1‑50 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 1:2725317/50‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 2:727842/50‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:5288848/1‑49 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |