| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 132 [0] | [0] 138 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 124 (0.870) +GA |
61/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
Only 100 of 138 total aligned reads displayed.
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 2:2621862‑M2/50‑50 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:95083‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:608891‑M2/1‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:1087256‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 2:841019‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 2:2529676‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:5048437‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc > 1:4257886‑M2/49‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 2:3346878‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 2:1034220‑M2/47‑50 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa > 1:4758693‑M2/45‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 2:2935189‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:1798162‑M2/9‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 1:3681604‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 1:5363023‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 2:2614249‑M2/9‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 1:2855106‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:2855079‑M2/7‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 2:3314671‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 2:4926910‑M2/10‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 2:716745‑M2/41‑50 (MQ=255) cagcactgacatcaatttgtgtcactcgcagcgcatagaACGCCATTTTg < 2:5231365‑M2/11‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:226235‑M2/11‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:4042699‑M2/11‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa < 2:4245368‑M2/13‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa > 1:1066403‑M2/38‑50 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 2:1724628‑M2/14‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:5371748‑M2/14‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:2366783‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:480308‑M2/15‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:13185‑M2/16‑1 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 2:5210156‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa < 2:3843657‑M2/17‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 2:4428198‑M2/18‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:542973‑M2/18‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:367296‑M2/19‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg > 2:3797151‑M2/31‑49 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGa < 2:487905‑M2/20‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:1450753‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 2:2391872‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 2:4111925‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 2:753517‑M2/22‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:3209725‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 2:136464‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg < 2:3368539‑M2/23‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:4515546‑M2/27‑49 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa < 2:2768088‑M2/25‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:785453‑M2/25‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa > 1:565052‑M2/26‑50 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc > 1:5560911‑M2/25‑50 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 2:1414297‑M2/31‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:1729264‑M2/31‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 2:5064045‑M2/32‑1 (MQ=255) tcacccgcagcgaatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:4077900‑M2/31‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:793603‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 2:4786972‑M2/33‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:3770835‑M2/33‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:177272‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 2:4726577‑M2/16‑48 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:1879872‑M2/16‑48 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCa < 1:605805‑M2/35‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCa < 2:813296‑M2/35‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:2879633‑M2/15‑50 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 2:3939796‑M2/15‑50 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:1162847‑M2/15‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:2623681‑M2/14‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt < 1:4374224‑M2/37‑1 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt < 2:5576615‑M2/37‑1 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:373519‑M2/13‑49 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACt < 1:1142172‑M2/41‑1 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:3287798‑M2/9‑50 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 2:2075591‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 2:1703501‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 2:5279358‑M2/8‑49 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 2:4219224‑M2/8‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 2:5352370‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:3989858‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 2:317572‑M2/44‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:5184962‑M2/44‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 2:2584128‑M2/45‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:2194479‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 2:131015‑M2/45‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:2642866‑M2/6‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:1877178‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 2:2383857‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:567977‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:5233526‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:451111‑M2/5‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:2350755‑M2/5‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:2242602‑M2/46‑1 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 2:1331445‑M2/4‑50 (MQ=255) agaAAGCCATTTTCACTTTACGAACGGACGCATTATCAGTGACTTTAACg > 2:3387557‑M2/4‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 2:4011272‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 2:313875‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg < 2:3112255‑M2/48‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 2:1776155‑M2/3‑50 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 2:727842‑M2/49‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:2725317‑M2/49‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa < 2:1469079/50‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa < 1:905486/50‑1 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |