| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 132 [0] | [0] 138 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 124 (0.870) +GA |
61/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
Only 100 of 132 total aligned reads displayed.
CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110630‑3110728 | ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 1:1902332/50‑1 (MQ=255)ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 2:1266025/50‑1 (MQ=255)ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 2:4721626/50‑1 (MQ=255) cAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg < 2:3896778‑M1/50‑2 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:103642‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:3976657‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 2:740102‑M1/50‑3 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 2:2621862‑M1/1‑47 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:1785397‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:95083‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 2:774615‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:608891‑M1/50‑4 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac > 2:68874‑M1/1‑46 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 2:2529676‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:5048437‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac > 1:4257886‑M1/1‑46 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 2:841019‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:1087256‑M1/50‑5 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 2:1034220‑M1/1‑44 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 2:3346878‑M1/1‑44 (MQ=255) ctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcca > 2:3885019‑M1/1‑42 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:5363023‑M1/1‑39 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:3681604‑M1/1‑39 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt < 2:4813807‑M1/50‑12 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 2:3314671‑M1/48‑10 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 1:2855079‑M1/48‑10 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 2:716745‑M1/1‑38 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg < 1:226235‑M1/50‑14 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg < 1:4042699‑M1/50‑14 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa > 2:4465778‑M1/1‑35 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa > 1:1066403‑M1/1‑35 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 2:1724628‑M1/50‑17 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 1:5371748‑M1/50‑17 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:2366783‑M1/1‑33 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt < 1:480308‑M1/50‑18 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattt < 1:13185‑M1/50‑19 (MQ=255) gACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 2:5210156‑M1/1‑30 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg < 1:367296‑M1/50‑22 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac < 1:542973‑M1/49‑21 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac < 2:4428198‑M1/49‑21 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattta < 2:3843657‑M1/48‑20 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacga < 2:487905‑M1/50‑23 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg > 2:3797151‑M1/1‑28 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 1:1450753‑M1/50‑25 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 2:4111925‑M1/50‑25 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 1:2777075‑M1/50‑25 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 2:2391872‑M1/50‑25 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgg < 1:3209725‑M1/50‑27 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgg < 2:136464‑M1/50‑27 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg < 1:2451902‑M1/49‑26 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg < 2:3368539‑M1/49‑26 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg > 1:4515546‑M1/1‑24 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga > 1:565052‑M1/1‑23 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga < 2:2768088‑M1/50‑28 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga < 1:785453‑M1/50‑28 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac > 1:5560911‑M1/1‑22 (MQ=255) gtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 2:1623002‑M1/1‑17 (MQ=255) gtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 1:3046883‑M1/1‑17 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatta < 2:5064045‑M1/50‑35 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatt < 1:3455897‑M1/49‑34 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatt < 1:1729264‑M1/49‑34 (MQ=255) tCACCCGCAGCGAATAgaacgccattttgaatttacgaacggacgcatt < 1:4077900‑M1/49‑34 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 2:5161807‑M1/50‑37 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 1:177272‑M1/50‑37 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 2:4786972‑M1/49‑36 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 1:3770835‑M1/49‑36 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 2:3175195‑M1/49‑36 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 1:605805‑M1/50‑38 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 2:1409518‑M1/50‑38 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 2:813296‑M1/50‑38 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:1879872‑M1/1‑13 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag < 2:1278142‑M1/50‑39 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 1:1162847‑M1/1‑12 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 2:3939796‑M1/1‑12 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 1:2879633‑M1/1‑12 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:4374224‑M1/50‑40 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 2:2794373‑M1/1‑10 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:373519‑M1/1‑10 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggacgcattatcagtgact < 1:5654881‑M1/50‑44 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggacgcattatcagtgact < 1:1142172‑M1/50‑44 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 2:2075591‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 2:1703501‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 2:5279358‑M1/1‑5 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 2:4219224‑M1/1‑5 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 2:317572‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:5184962‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 1:3989858‑M1/1‑4 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 2:5352370‑M1/1‑4 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa > 1:2642866‑M1/1‑3 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa < 2:2584128‑M1/50‑48 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa > 1:2194479‑M1/1‑3 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 1:2350755‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 1:451111‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:2242602‑M1/50‑49 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 2:2592261‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 2:2383857‑M1/50‑49 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:1877178‑M1/50‑49 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 2:5295518‑M1/1‑1 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 2:1331445‑M1/1‑1 (MQ=255) agaaagccattttcactttacgaacggacgcattatcagtgactttaacg > 2:3387557‑M1/1‑1 (MQ=255) | CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110630‑3110728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |