| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 216 [0] | [0] 217 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 210 (1.440) | 84/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 216 total aligned reads displayed.
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191698‑3191746 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 2:3192767/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:543793/1‑50 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:4312677/1‑50 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 2:3717887/50‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:2277670/1‑50 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:3548494/1‑50 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:1081719/1‑50 AATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 2:4591764/1‑49 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT > 1:269305/1‑49 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 2:2442298/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 2:1138699/49‑1 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA < 1:1862929/50‑1 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA < 1:4425453/50‑1 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 2:4048632/1‑49 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:716396/1‑49 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:5072359/50‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 1:1727676/49‑1 TTAGCGGCAGCAACGCATAGCTTCCCATAATTCTGGTTTATATCTAATAC < 2:2790415/50‑1 TAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC > 1:5593087/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:3207429/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:3803599/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 2:3584743/50‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAA < 1:2923422/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAA < 2:4551805/49‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 2:2662948/50‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 1:2400718/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 2:1718173/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 2:2888617/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 2:1562950/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 2:1241685/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 2:4633092/1‑50 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:1187319/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:2534246/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:149776/50‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:487635/50‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT > 1:3453792/1‑49 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT > 1:5362895/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA < 2:3102655/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:1001799/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 2:3043859/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 2:3649471/50‑1 CAACGCATAGCTTCACAAAATTCTGGTTTATATCTAATACAAACACTAA > 1:3254017/1‑49 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA > 2:1301269/1‑50 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA > 2:2422266/1‑50 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:706541/50‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 2:5326385/50‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA > 1:523426/1‑50 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:3421597/50‑1 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:405010/50‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG < 1:578739/50‑1 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG < 2:3482661/50‑1 GCATAGATTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG > 2:4492068/1‑50 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG > 2:3120744/1‑50 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 2:771105/50‑1 AGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 2:696372/1‑50 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT < 2:2103351/50‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:860079/49‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATC < 1:1634228/50‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATC < 2:198096/50‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATC < 2:1789828/50‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 2:4831418/1‑49 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 2:584104/1‑49 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 1:4536367/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 2:5508929/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 2:21411/49‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 1:4764083/49‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 2:2572792/49‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:4943150/48‑1 CATAATTCTGGTTTATATCTAATTCAAACACTAAAACGGGCCATCAGGCC < 2:1742464/50‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:3310566/1‑50 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:3163259/1‑50 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 2:2837285/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:4168908/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:1606615/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 2:4187175/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:1979157/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:2289124/1‑50 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:4653736/1‑50 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG < 2:3328985/50‑1 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG < 2:2676209/50‑1 AATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1922003/1‑50 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2129358/1‑49 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA < 2:1092717/50‑1 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA < 1:2976947/50‑1 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:4374751/1‑50 TCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:1703519/1‑49 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 2:3802320/1‑50 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:1455903/50‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:1960404/50‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:4281251/50‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:2838151/1‑48 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG > 2:3141213/1‑50 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > 2:5476279/1‑50 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT < 1:4612555/49‑1 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT < 2:3389118/49‑1 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT < 1:763149/49‑1 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 1:2781246/1‑50 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 1:516179/1‑50 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT < 1:3361527/50‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC < 2:2254356/49‑1 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191698‑3191746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |