| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 216 [0] | [0] 217 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 210 (1.440) | 84/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 217 total aligned reads displayed.
GAGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTC > NC_000913/3191649‑3191747 | gctaatgattagcggcagcaacgcatagcttcacataattctggtttata > 1:4312677‑M2/50‑50 (MQ=255) ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat > 1:2277670‑M2/49‑50 (MQ=255) taatgattagcggcagcaacgcatagcttcacataattctggtttatATc > 1:1081719‑M2/48‑50 (MQ=255) aatgattagcggcagcaacgcatagcttcacataattctggtttatATc > 2:4591764‑M2/47‑49 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATc < 1:1663428‑M2/3‑1 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt < 1:4945231‑M2/4‑1 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt > 2:1055304‑M2/46‑49 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt > 2:1724701‑M2/46‑49 (MQ=255) tgattagcggcagcaacgcatagcttcacataattctggtttatATCTaa < 1:1862929‑M2/6‑1 (MQ=255) tgattagcggcagcaacgcatagcttcacataattctggtttatATCTaa < 1:2019174‑M2/6‑1 (MQ=255) gattagcggcagcaacgcatagcttcacataattctggtttatATCTaa > 1:716396‑M2/44‑49 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAAt < 1:1727676‑M2/7‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAAt < 2:2283394‑M2/7‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa > 1:4379039‑M2/43‑50 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa < 1:5072359‑M2/8‑1 (MQ=255) ttagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc < 2:116316‑M2/9‑1 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa > 2:3786917‑M2/40‑49 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 1:2923422‑M2/11‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 2:2541122‑M2/11‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 2:4551805‑M2/11‑1 (MQ=255) cggcagcaacgcatagcttcacataattctggtttatATCTAATACAAac < 2:2662948‑M2/13‑1 (MQ=255) cggcagcaacgcatagcttcacataattctggtttatATCTAATACAAac < 1:2400718‑M2/13‑1 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca > 2:2938906‑M2/37‑50 (MQ=255) gcagcaacgcatagcttcacataattctggtttatATCTAATACAAacac < 2:1241685‑M2/15‑1 (MQ=255) gcagcaacgcatagcttcacataattctggtttatATCTAATACAAacac > 2:4633092‑M2/36‑50 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAACACt < 1:2534246‑M2/16‑1 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAACACt < 1:149776‑M2/16‑1 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAACACt < 1:1187319‑M2/16‑1 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:5362895‑M2/34‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:3453792‑M2/34‑49 (MQ=255) gcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa > 2:3367888‑M2/33‑49 (MQ=255) caacgcatagcttcacataattctggtttatATCTAATACAAACACTaaa < 2:3880788‑M2/19‑1 (MQ=255) caacgcatagcttcacataattctggtttatATCTAATACAAACACTaaa < 1:1001799‑M2/19‑1 (MQ=255) caacgcatagcttcacaaaattctggtttatATCTAATACAAACACTaa > 1:3254017‑M2/32‑49 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa < 1:842215‑M2/20‑1 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa < 1:3421597‑M2/20‑1 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa < 1:706541‑M2/20‑1 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa > 2:1301269‑M2/31‑50 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa > 1:523426‑M2/31‑50 (MQ=255) acgcatagcttcacataattctggtttatATCTAATACAAACACTAAAAc < 1:405010‑M2/21‑1 (MQ=255) acgcatagcttcacataattctggtttatATCTAATACAAACACTAAAAc < 2:3070012‑M2/21‑1 (MQ=255) cgcatagcttcacataattctggtttatATCTAATACAAACACTAAAACg > 2:2857028‑M2/29‑50 (MQ=255) cgcatagcttcacataattctggtttatATCTAATACAAACACTAAAACg < 1:578739‑M2/22‑1 (MQ=255) gcatagcttcacataattctggtttatATCTAATACAAACACTAAAACgg < 2:3482661‑M2/23‑1 (MQ=255) gcatagcttcacataattctggtttatATCTAATACAAACACTAAAACgg < 1:5608374‑M2/23‑1 (MQ=255) gcatagattcacataattctggtttatATCTAATACAAACACTAAAACgg > 2:4492068‑M2/28‑50 (MQ=255) catagcttcacataattctggtttatATCTAATACAAACACTAAAACggg > 2:3120744‑M2/27‑50 (MQ=255) catagcttcacataattctggtttatATCTAATACAAACACTAAAACggg > 2:1776530‑M2/27‑50 (MQ=255) tagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGcc < 2:771105‑M2/26‑1 (MQ=255) tagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc > 2:2764395‑M2/25‑49 (MQ=255) agcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCa > 2:696372‑M2/24‑50 (MQ=255) gcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCa < 1:4504634‑M2/27‑1 (MQ=255) gcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt < 2:3713112‑M2/28‑1 (MQ=255) gcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt < 2:2103351‑M2/28‑1 (MQ=255) cttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt > 2:584104‑M2/22‑49 (MQ=255) cttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt > 2:4831418‑M2/22‑49 (MQ=255) cttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCATc < 2:198096‑M2/29‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCa < 2:4121140‑M2/30‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg > 1:4536367‑M2/19‑50 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg > 2:5508929‑M2/19‑50 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg < 1:4764083‑M2/31‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg < 2:2572792‑M2/31‑1 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg < 2:1122006‑M2/31‑1 (MQ=255) cataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGcc > 1:3310566‑M2/17‑50 (MQ=255) cataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGcc > 1:3163259‑M2/17‑50 (MQ=255) cataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGcc > 1:2697124‑M2/17‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 2:4187175‑M2/16‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:1606615‑M2/16‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:2289124‑M2/16‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:4168908‑M2/16‑50 (MQ=255) taattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCg > 1:4653736‑M2/15‑50 (MQ=255) aattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:1922003‑M2/14‑50 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGtt < 1:4892438‑M2/38‑1 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGtt < 2:16217‑M2/38‑1 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 2:5115769‑M2/13‑49 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:2129358‑M2/13‑49 (MQ=255) ttctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTta < 1:2976947‑M2/39‑1 (MQ=255) tctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTta > 1:3570264‑M2/11‑49 (MQ=255) tctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTta > 2:1823207‑M2/11‑49 (MQ=255) tctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTta > 1:1703519‑M2/11‑49 (MQ=255) ctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTtata > 1:321167‑M2/10‑50 (MQ=255) ctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTtat < 1:5471181‑M2/40‑1 (MQ=255) ggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 2:2797140‑M2/8‑49 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTtata < 2:21672‑M2/41‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:2838151‑M2/7‑48 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCa < 1:1455903‑M2/44‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCa < 1:4281251‑M2/44‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCa < 1:1960404‑M2/44‑1 (MQ=255) tttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAg > 2:3141213‑M2/6‑50 (MQ=255) tttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAg < 1:3871750‑M2/45‑1 (MQ=255) ttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGt > 2:3392414‑M2/5‑50 (MQ=255) ttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGt > 2:5476279‑M2/5‑50 (MQ=255) tatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGt < 1:4612555‑M2/46‑1 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg < 2:3604518‑M2/47‑1 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg < 2:3299488‑M2/47‑1 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg < 2:2429628‑M2/47‑1 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGc > 1:516179‑M2/3‑50 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGc > 1:2781246‑M2/3‑50 (MQ=255) tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCt < 1:3361527‑M2/49‑1 (MQ=255) aTCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGctc > 2:2999893/1‑50 (MQ=255) | GAGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTC > NC_000913/3191649‑3191747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |