| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 216 [0] | [0] 217 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 210 (1.440) | 84/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 216 total aligned reads displayed.
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGG > NC_000913/3184732‑3184830 | cGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 2:3192767‑M1/50‑1 (MQ=255) gCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa > 1:543793‑M1/1‑49 (MQ=255) gCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa > 1:4312677‑M1/1‑49 (MQ=255) gCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa < 2:3717887‑M1/50‑2 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat > 1:2277670‑M1/1‑48 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat > 1:3548494‑M1/1‑48 (MQ=255) tAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1081719‑M1/1‑47 (MQ=255) aaTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 2:4591764‑M1/1‑46 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct > 1:269305‑M1/1‑45 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 2:2442298‑M1/49‑5 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 2:1138699‑M1/49‑5 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa < 1:1862929‑M1/50‑7 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa < 1:4425453‑M1/50‑7 (MQ=255) gATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 2:4048632‑M1/1‑43 (MQ=255) gATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 1:716396‑M1/1‑43 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:5072359‑M1/50‑9 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaat < 1:1727676‑M1/49‑8 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCCCATAATTCTGGTTTATatctaatac < 2:2790415‑M1/50‑10 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac > 1:5593087‑M1/1‑40 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca < 1:3207429‑M1/49‑11 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca < 1:3803599‑M1/49‑11 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 2:3584743‑M1/50‑13 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaa < 1:2923422‑M1/49‑12 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaa < 2:4551805‑M1/49‑12 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 2:2662948‑M1/50‑14 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 1:2400718‑M1/50‑14 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca < 2:1718173‑M1/50‑15 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca < 2:2888617‑M1/50‑15 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca < 2:1562950‑M1/50‑15 (MQ=255) gcagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac < 2:1241685‑M1/50‑16 (MQ=255) gcagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 2:4633092‑M1/1‑35 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 1:1187319‑M1/50‑17 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 1:2534246‑M1/50‑17 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 1:149776‑M1/50‑17 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacacta < 1:487635‑M1/50‑18 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact > 1:3453792‑M1/1‑33 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact > 1:5362895‑M1/1‑33 (MQ=255) gcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa < 2:3102655‑M1/50‑19 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:1001799‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 2:3043859‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 2:3649471‑M1/50‑20 (MQ=255) caACGCATAGCTTCACAAAATTCTGGTTTATatctaatacaaacactaa > 1:3254017‑M1/1‑31 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa > 2:1301269‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa > 2:2422266‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 1:706541‑M1/50‑21 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 2:5326385‑M1/50‑21 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa > 1:523426‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 1:3421597‑M1/50‑21 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:405010‑M1/50‑22 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:578739‑M1/50‑23 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 2:3482661‑M1/50‑24 (MQ=255) gCATAGATTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 2:4492068‑M1/1‑27 (MQ=255) cATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacggg > 2:3120744‑M1/1‑26 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcc < 2:771105‑M1/50‑27 (MQ=255) aGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca > 2:696372‑M1/1‑23 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat < 2:2103351‑M1/50‑29 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca < 1:860079‑M1/49‑28 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatc < 1:1634228‑M1/50‑30 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatc < 2:198096‑M1/50‑30 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatc < 2:1789828‑M1/50‑30 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 2:4831418‑M1/1‑21 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 2:584104‑M1/1‑21 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg > 1:4536367‑M1/1‑18 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg > 2:5508929‑M1/1‑18 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcag < 2:21411‑M1/49‑32 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcag < 1:4764083‑M1/49‑32 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcag < 2:2572792‑M1/49‑32 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:4943150‑M1/48‑31 (MQ=255) caTAATTCTGGTTTATatctaattcaaacactaaaacgggccatcaggcc < 2:1742464‑M1/50‑35 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 1:3310566‑M1/1‑16 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 1:3163259‑M1/1‑16 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 2:2837285‑M1/1‑16 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 1:4168908‑M1/1‑15 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 1:1606615‑M1/1‑15 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 2:4187175‑M1/1‑15 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 1:1979157‑M1/1‑15 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 1:2289124‑M1/1‑15 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccg > 1:4653736‑M1/1‑14 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccg < 2:3328985‑M1/50‑37 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccg < 2:2676209‑M1/50‑37 (MQ=255) aaTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1922003‑M1/1‑13 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:2129358‑M1/1‑12 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta < 2:1092717‑M1/50‑40 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta < 1:2976947‑M1/50‑40 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:4374751‑M1/1‑11 (MQ=255) tCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:1703519‑M1/1‑10 (MQ=255) cTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgttata > 2:3802320‑M1/1‑9 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatatca < 1:1455903‑M1/50‑45 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatatca < 1:1960404‑M1/50‑45 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatatca < 1:4281251‑M1/50‑45 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:2838151‑M1/1‑6 (MQ=255) tttATatctaatacaaacactaaaacgggccatcaggcccgttatatcag > 2:3141213‑M1/1‑5 (MQ=255) ttATatctaatacaaacactaaaacgggccatcaggcccgttatatcagt > 2:5476279‑M1/1‑4 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 1:4612555‑M1/49‑47 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 2:3389118‑M1/49‑47 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 1:763149‑M1/49‑47 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:2781246‑M1/1‑2 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:516179‑M1/1‑2 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgct < 1:3361527‑M1/50‑50 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc < 2:2254356‑M1/49‑49 (MQ=255) | CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGG > NC_000913/3184732‑3184830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |