Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,204,350 Δ32,368 bp yehL–preA 30 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2204350 2236717 32368 139 [0] [0] 138 yehL–preA yehL,yehM,yehP,yehQ,yehR,yehS,btsR,btsS,mlrA,yohO,yehW,yehX,yehY,osmF,bglX,dld,pbpG,yohC,yohD,yohF,mdtQ,yohP,dusC,yohJ,yohK,cdd,sanA,yeiS,preT,preA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 22043490 (0.000)137 (0.920) 69/98 0.0 100% intergenic (+60/‑247) yehK/yehL uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL
?NC_000913 2236718 = 0 (0.000)intergenic (+218/+25) preA/mglC NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit

Only 100 of 139 total aligned reads displayed.

ATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTC  >  NC_000913/2204300‑2204397
                                                 |                                                
ataatTCAAATTGGTCCGAGCCGGCGCAACGTCCCAATGGCCTGGATtat                                                  <  2:812664/50‑1 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                 <  1:4129973‑M1/50‑2 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                 >  2:4040552‑M1/1‑49 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                 <  1:143064‑M1/50‑2 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                 <  2:2442970‑M1/50‑2 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                 <  1:2839385‑M1/50‑2 (MQ=255)
  aaTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                 >  2:5513901‑M1/1‑48 (MQ=255)
   aTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtga                                               >  2:2820451‑M1/1‑47 (MQ=255)
    ttCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgac                                              <  2:5405763‑M1/50‑5 (MQ=255)
    ttCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgac                                              >  2:3108904‑M1/1‑46 (MQ=255)
      cAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgacc                                             <  1:2619402‑M1/49‑6 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccga                                           <  1:3702025‑M1/50‑8 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccga                                           <  1:2900351‑M1/50‑8 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                            <  1:1050629‑M1/49‑7 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                            >  2:2908786‑M1/1‑43 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                            <  2:5064424‑M1/49‑7 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                            >  1:17331‑M1/1‑43 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                            >  2:609742‑M1/1‑43 (MQ=255)
        aaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaa                                          <  2:2765891‑M1/50‑9 (MQ=255)
          ttGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatg                                        <  2:4174776‑M1/50‑11 (MQ=255)
          ttGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatg                                        <  1:1776102‑M1/50‑11 (MQ=255)
           tGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       >  2:2062243‑M1/1‑39 (MQ=255)
           tGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       >  2:2608060‑M1/1‑39 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcg                                      >  2:359630‑M1/1‑38 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcg                                      >  1:390784‑M1/1‑38 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       <  1:3188059‑M1/49‑12 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       <  2:4006753‑M1/49‑12 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       <  1:5356423‑M1/49‑12 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       <  2:1599711‑M1/49‑12 (MQ=255)
            ggTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgc                                       <  2:4511237‑M1/49‑12 (MQ=255)
             gTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcg                                      >  1:5666139‑M1/1‑37 (MQ=255)
             gTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcg                                      <  1:5340514‑M1/49‑13 (MQ=255)
              tCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcgga                                    >  2:2132886‑M1/1‑36 (MQ=255)
               ccGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                   >  1:4588084‑M1/1‑35 (MQ=255)
               ccGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                   >  2:662686‑M1/1‑35 (MQ=255)
               ccGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                   >  1:3583687‑M1/1‑35 (MQ=255)
               ccGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                   >  1:2545768‑M1/1‑35 (MQ=255)
                cGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                   >  2:1582903‑M1/1‑34 (MQ=255)
                cGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                   >  2:2259098‑M1/1‑34 (MQ=255)
                 gATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                 >  2:2497078‑M1/1‑33 (MQ=255)
                 gATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                 <  1:5606215‑M1/50‑18 (MQ=255)
                  aTCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                 >  1:4506208‑M1/1‑32 (MQ=255)
                  aTCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                 >  2:5277174‑M1/1‑32 (MQ=255)
                   tCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccaca                               <  2:4607801‑M1/50‑20 (MQ=255)
                     cGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacatt                             >  1:2995344‑M1/1‑29 (MQ=255)
                      ggCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattc                            <  1:2736533‑M1/50‑23 (MQ=255)
                      ggCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattc                            <  1:2387893‑M1/50‑23 (MQ=255)
                      ggCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattc                            <  2:3460077‑M1/50‑23 (MQ=255)
                      ggCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacatt                             >  1:27917‑M1/1‑28 (MQ=255)
                       gcgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattca                           <  2:1321682‑M1/50‑24 (MQ=255)
                        cgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcac                          <  1:4397562‑M1/50‑25 (MQ=255)
                        cgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcac                          <  1:4901585‑M1/50‑25 (MQ=255)
                         gcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcaca                         <  2:3572767‑M1/50‑26 (MQ=255)
                         gcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcaca                         >  2:337054‑M1/1‑25 (MQ=255)
                          cAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacat                        >  2:1569846‑M1/1‑24 (MQ=255)
                          cAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacat                        <  2:3815094‑M1/50‑27 (MQ=255)
                           aaCGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacat                        >  1:987942‑M1/1‑23 (MQ=255)
                            aCGTCCCAATGGCCTGGATTATtgaccgaatgcggtccacattcacatca                      >  1:4290098‑M1/1‑22 (MQ=255)
                            aCGTCCCAATGGCCTGGATTATtgaccgaatgcggcccatattcacatca                      >  2:411170‑M1/1‑22 (MQ=255)
                             cGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcat                     >  2:1157938‑M1/1‑21 (MQ=255)
                             cGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcat                     >  1:5625460‑M1/1‑21 (MQ=255)
                             cGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcat                     <  1:1405255‑M1/50‑30 (MQ=255)
                             cGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcat                     >  2:2177189‑M1/1‑21 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                    <  2:3865553‑M1/50‑31 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                    <  1:854686‑M1/50‑31 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                    >  1:1926009‑M1/1‑20 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                    <  1:3003959‑M1/50‑31 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                    >  1:665494‑M1/1‑20 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                    >  1:5628913‑M1/1‑20 (MQ=255)
                               gcccaATGGCCTGGATTATtgaccgaatgcggaccacattcacatcattt                   <  1:3232993‑M1/49‑32 (MQ=255)
                                 ccAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttct                 <  2:4989435‑M1/50‑34 (MQ=255)
                                 ccAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttct                 >  1:3924441‑M1/1‑17 (MQ=255)
                                 ccAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttct                 <  1:5088798‑M1/50‑34 (MQ=255)
                                  cAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttct                 >  2:1103738‑M1/1‑16 (MQ=255)
                                   aaTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctta               >  1:1356556‑M1/1‑15 (MQ=255)
                                   aaTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctta               <  2:1289118‑M1/50‑36 (MQ=255)
                                   aaTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcgta               <  1:5095070‑M1/50‑36 (MQ=255)
                                    aTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttac              >  1:1163914‑M1/1‑14 (MQ=255)
                                    aTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttac              <  2:3637444‑M1/50‑37 (MQ=255)
                                     tGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacg             <  1:366255‑M1/50‑38 (MQ=255)
                                     tGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacg             >  1:766251‑M1/1‑13 (MQ=255)
                                       gCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgc            <  1:1255581‑M1/49‑39 (MQ=255)
                                       gCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgc            <  2:3077763‑M1/49‑39 (MQ=255)
                                        ccTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgc          <  1:1974792‑M1/50‑41 (MQ=255)
                                        ccTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgc          >  2:2054373‑M1/1‑10 (MQ=255)
                                         cTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg         >  1:5607763‑M1/1‑9 (MQ=255)
                                           ggATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgta       >  1:5258906‑M1/1‑7 (MQ=255)
                                           ggATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgta       >  1:1608222‑M1/1‑7 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgtat      <  1:84316‑M1/50‑45 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgta       <  1:22007‑M1/49‑44 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgta       <  2:3274347‑M1/49‑44 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgt        <  1:1685190‑M1/48‑43 (MQ=255)
                                             attattgaccgaatgcggaccacattcacatcatttcttacgcgcgtatt     <  1:1599885‑M1/50‑46 (MQ=255)
                                             attattgaccgaatgcggaccacattcacatcatttcttacgcgcgtatg     <  2:11671‑M1/50‑46 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt    <  2:4436086‑M1/50‑47 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt    >  2:5021105‑M1/1‑4 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt    <  2:1189681‑M1/50‑47 (MQ=255)
                                                attgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttc   <  1:2158903‑M1/49‑48 (MQ=255)
                                                attgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttc   <  2:5112238‑M1/49‑48 (MQ=255)
                                                 ttgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttca  <  2:1492514‑M1/49‑49 (MQ=255)
                                                 |                                                
ATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTC  >  NC_000913/2204300‑2204397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.