Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,997,112 Δ26,567 bp [tcyN]–[fliR] 32 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1997112 2023678 26567 102 [0] [0] 102 [tcyN]–[fliR] [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19971110 (0.000)101 (0.680) 58/98 0.1 100% coding (704/753 nt) tcyN cystine ABC transporter ATP binding subunit
?NC_000913 2023679 = 0 (0.000)intergenic (+1/‑289) fliR/rcsA flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA

Only 100 of 102 total aligned reads displayed.

TTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC  >  NC_000913/2023633‑2023728
                                              |                                                 
tgcagcagaaacttctcgaggaactggcgggggcgaggctgctcggTTcc                                                >  1:4250692‑M2/47‑50 (MQ=255)
 gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  2:3154381‑M2/4‑1 (MQ=255)
 gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  1:2993985‑M2/4‑1 (MQ=255)
 gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                <  1:1584420‑M2/4‑1 (MQ=255)
 gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCg                                               >  1:959862‑M2/46‑50 (MQ=255)
 gcagcagaaacttctcgaggaactggcgggtgcgaggctgcccggGTCCg                                               >  2:128045‑M2/46‑50 (MQ=255)
   agcagaaacttctcgaggaactggcgggtgcgcggctgcgccgTTCCGt                                              >  2:2219014‑M2/44‑49 (MQ=255)
   agcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTa                                             <  2:3722360‑M2/7‑1 (MQ=255)
   agcagaaacttctcgaggaactggcgggggcgaggctgctcggTTTCGt                                              >  2:1911725‑M2/44‑49 (MQ=255)
    gcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTa                                             >  1:1889531‑M2/43‑49 (MQ=255)
    gcagaaacttctcgaggaactggcgggtgccaggctgctcggTTCCCTaa                                            >  1:3816647‑M2/43‑50 (MQ=255)
    gcagaaacttctcgaggaactggcgggggcgaggctgctcggTTCCGTaa                                            >  1:5578950‑M2/43‑50 (MQ=255)
     cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc                                           <  2:1480485‑M2/9‑1 (MQ=255)
     cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc                                           <  1:5114479‑M2/9‑1 (MQ=255)
     cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc                                           <  2:4682636‑M2/9‑1 (MQ=255)
     cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc                                           <  2:5125427‑M2/9‑1 (MQ=255)
      agaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGTAACg                                          >  1:1821862‑M2/41‑50 (MQ=255)
      agaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGTAACg                                          >  1:5166273‑M2/41‑50 (MQ=255)
       gaaacttctcgaggaactggcgggggcgaggctgctcggGTCCGTAACGt                                         >  1:3548524‑M2/40‑50 (MQ=255)
        aaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGtt                                        >  1:3355692‑M2/39‑50 (MQ=255)
        aaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGtt                                        >  1:1360452‑M2/39‑50 (MQ=255)
        aaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGTAACGtt                                        >  1:1034241‑M2/39‑50 (MQ=255)
         aacttctcgaggaactggcgggtgcggggctgctcggTTCCGTAACGtt                                        >  1:238192‑M2/38‑49 (MQ=255)
          acttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTa                                      <  1:3603810‑M2/14‑1 (MQ=255)
          acttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTa                                      <  2:5429876‑M2/14‑1 (MQ=255)
          acttctcgaggaactggcgggtgcgaggctgctcggGTCCGTAACGTTTa                                      >  2:1681413‑M2/37‑50 (MQ=255)
          acttctcgaggaactggcgggtgaggggctgctcggTTTCGTAACGTTTa                                      >  2:3683603‑M2/37‑50 (MQ=255)
             tctcgaggaactggcgggtgcgggggtgctcggTTCCGTAACGTTTATCa                                   >  2:536958‑M2/34‑50 (MQ=255)
             tctcgaggaactggcgggggcgaggctgcccggTTCCGTAACGTTTATCa                                   >  1:2795323‑M2/34‑50 (MQ=255)
              ctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCa                                   <  1:4904841‑M2/17‑1 (MQ=255)
               tcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg                                 >  1:2301650‑M2/32‑50 (MQ=255)
               tcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg                                 >  2:5327860‑M2/32‑50 (MQ=255)
               tcgaggaactggcgggtgcgaggctgctcggTTCCCTAACGTTTATCATg                                 >  2:613066‑M2/32‑50 (MQ=255)
                cgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt                                >  1:1226294‑M2/31‑50 (MQ=255)
                cgaggaactggcgggtgcgaggctgctcggGTCCGTAACGTTTATCATGt                                >  1:3143365‑M2/31‑50 (MQ=255)
                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg                                 <  2:1737080‑M2/19‑1 (MQ=255)
                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGtt                               <  2:4229439‑M2/21‑1 (MQ=255)
                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGtt                               <  1:5317522‑M2/21‑1 (MQ=255)
                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt                                <  2:4952344‑M2/20‑1 (MQ=255)
                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt                                <  2:3909432‑M2/20‑1 (MQ=255)
                 gaggaactggcgggtgcgaggctgctcggGTCCGTAACGTTTATCATGt                                >  1:4480819‑M2/30‑49 (MQ=255)
                 gaggaactggcgggggcgaggcggctcggGTCCGTAACGTTTTTCATGt                                >  2:5366950‑M2/30‑49 (MQ=255)
                  aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa                              <  2:2431310‑M2/22‑1 (MQ=255)
                  aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa                              >  2:5055304‑M2/29‑50 (MQ=255)
                   ggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt                             >  1:36012‑M2/28‑50 (MQ=255)
                    gaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATc                            <  2:2015928‑M2/24‑1 (MQ=255)
                    gaactggcgggggcgaggctgctcggGTCCGTAACGTTTATCATGTTATc                            >  1:1933407‑M2/27‑50 (MQ=255)
                     aactggcgggtgcggggctgctcggTTCCGTAACGGTTATCATGTTATcc                           >  2:3567786‑M2/26‑50 (MQ=255)
                      actggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          <  1:735618‑M2/26‑1 (MQ=255)
                      actggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          <  2:1865545‑M2/26‑1 (MQ=255)
                       ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          >  1:4883715‑M2/24‑49 (MQ=255)
                       ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          >  1:4918000‑M2/24‑49 (MQ=255)
                       ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTa                         <  2:2821939‑M2/27‑1 (MQ=255)
                        tggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          >  2:637816‑M2/23‑48 (MQ=255)
                        tggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt                          >  1:5334102‑M2/23‑48 (MQ=255)
                         ggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       >  1:27169‑M2/22‑50 (MQ=255)
                         ggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       >  1:1699129‑M2/22‑50 (MQ=255)
                          gcgggtgcgaggctgctcggTTCCGTAACGTTTATTATGTTATCCTaa                        <  2:3516235‑M2/28‑1 (MQ=255)
                          gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTaa                        <  1:728098‑M2/28‑1 (MQ=255)
                          gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAgg                      <  1:5539649‑M2/30‑1 (MQ=255)
                          gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       <  2:1520884‑M2/29‑1 (MQ=255)
                          gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       >  2:4180058‑M2/21‑49 (MQ=255)
                          gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg                       <  2:4484601‑M2/29‑1 (MQ=255)
                           cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa                     >  1:1206092‑M2/20‑50 (MQ=255)
                            gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    >  2:745296‑M2/19‑50 (MQ=255)
                            gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    <  2:5537813‑M2/32‑1 (MQ=255)
                            gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    <  2:2967621‑M2/32‑1 (MQ=255)
                            gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    <  2:1485564‑M2/32‑1 (MQ=255)
                             ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt                   <  1:292916‑M2/33‑1 (MQ=255)
                             ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt                   <  2:3916542‑M2/33‑1 (MQ=255)
                             ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    >  1:3253619‑M2/18‑49 (MQ=255)
                             ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                    >  2:4656102‑M2/18‑49 (MQ=255)
                             ggtgcgaggctgcgcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt                   <  2:4497580‑M2/33‑1 (MQ=255)
                              gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa                  >  2:1740459‑M2/17‑50 (MQ=255)
                               tgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTAt                 <  2:295022‑M2/35‑1 (MQ=255)
                               tgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTAt                 >  2:2145982‑M2/16‑50 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  2:1781675‑M2/14‑50 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  2:1094371‑M2/14‑50 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               <  1:3997838‑M2/37‑1 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  1:4749645‑M2/14‑50 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  1:3441627‑M2/14‑50 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               <  2:3779799‑M2/37‑1 (MQ=255)
                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                <  1:3986948‑M2/36‑1 (MQ=255)
                                  gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  1:4779402‑M2/13‑49 (MQ=255)
                                  gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  2:4485639‑M2/13‑49 (MQ=255)
                                  gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc               >  1:4316359‑M2/13‑49 (MQ=255)
                                  gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg              <  1:3774781‑M2/38‑1 (MQ=255)
                                   aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg              >  2:2640667‑M2/12‑49 (MQ=255)
                                    ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaa            <  1:4555765‑M2/40‑1 (MQ=255)
                                    ggctgctcggTTCCGTAACGTTTATCATGATATCTTAAGGATTACCCGa             >  2:1462443‑M2/11‑49 (MQ=255)
                                     gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa           <  2:4551519‑M2/41‑1 (MQ=255)
                                         ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaata       <  1:4526249‑M2/45‑1 (MQ=255)
                                         ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat        <  1:2897420‑M2/44‑1 (MQ=255)
                                         ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat        <  1:1479866‑M2/44‑1 (MQ=255)
                                          tcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa      >  1:1008504‑M2/5‑50 (MQ=255)
                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   <  2:5342642‑M2/49‑1 (MQ=255)
                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   >  2:246500‑M2/2‑50 (MQ=255)
                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   >  2:4434616‑M2/2‑50 (MQ=255)
                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc   >  2:5660853‑M2/2‑50 (MQ=255)
                                              ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc  <  2:2271609/50‑1 (MQ=255)
                                              |                                                 
TTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC  >  NC_000913/2023633‑2023728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.