BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	217 [0]	[0] 218	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	208 (1.420)	84/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
*	?	NC_000913	689045 =	0 (0.000)	208 (1.420)	84/96	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region

Only 100 of 217 total aligned reads displayed.

TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908

ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   <  1:3012627‑M1/50‑1 (MQ=255)

  aTCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  <  1:691802‑M1/49‑2 (MQ=255)

   tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  2:5427584‑M1/1‑47 (MQ=255)

    cGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  1:1516710‑M1/1‑46 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:3450435‑M1/50‑6 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  2:2243500‑M1/1‑45 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  2:2760719‑M1/1‑45 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  2:4058754‑M1/1‑45 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:2082324‑M1/1‑45 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:4664274‑M1/1‑45 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:1728413‑M1/1‑45 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:4037325‑M1/50‑6 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctta                                               <  1:4597584‑M1/49‑5 (MQ=255)

      tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             <  1:3207900‑M1/50‑7 (MQ=255)

      tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             >  2:3869676‑M1/1‑44 (MQ=255)

       cTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             >  2:1460323‑M1/1‑43 (MQ=255)

       cTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             >  1:1656879‑M1/1‑43 (MQ=255)

        tGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            >  1:4736598‑M1/1‑42 (MQ=255)

         gCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  2:4938770‑M1/1‑41 (MQ=255)

          cgactTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  2:2472633‑M1/46‑9 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:2589728‑M1/49‑10 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:2169164‑M1/49‑10 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:1978653‑M1/49‑10 (MQ=255)

           aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        <  1:3179449‑M1/50‑12 (MQ=255)

           aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        >  2:590059‑M1/1‑39 (MQ=255)

            aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat                                       <  1:5386628‑M1/50‑13 (MQ=255)

            aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat                                       >  1:49521‑M1/1‑38 (MQ=255)

             cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  2:1076558‑M1/1‑37 (MQ=255)

             cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  2:5066918‑M1/1‑37 (MQ=255)

              tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  2:4582440‑M1/1‑36 (MQ=255)

               ttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  2:1509509‑M1/1‑35 (MQ=255)

                tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  2:832546‑M1/49‑16 (MQ=255)

                 aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  >  1:3583194‑M1/1‑33 (MQ=255)

                 aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:4848227‑M1/49‑17 (MQ=255)

                 aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:4543821‑M1/49‑17 (MQ=255)

                  ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 >  1:5655936‑M1/1‑32 (MQ=255)

                  ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 <  1:4185030‑M1/50‑19 (MQ=255)

                   tgtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                >  1:4477338‑M1/1‑31 (MQ=255)

                    gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                <  2:5667845‑M1/49‑20 (MQ=255)

                    gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                <  2:262968‑M1/49‑20 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  2:4537466‑M1/49‑21 (MQ=255)

                      gCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  1:2259858‑M1/1‑28 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            <  2:3369307‑M1/50‑24 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             <  1:5064095‑M1/49‑23 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  2:4390695‑M1/1‑27 (MQ=255)

                        aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            >  2:5586363‑M1/1‑26 (MQ=255)

                        aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            >  1:632943‑M1/1‑26 (MQ=255)

                        aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            >  2:155103‑M1/1‑26 (MQ=255)

                         gtgtTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaa                          <  1:502603‑M1/50‑26 (MQ=255)

                          tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         <  2:5567082‑M1/50‑27 (MQ=255)

                          tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         >  2:163764‑M1/1‑24 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  2:2815924‑M1/50‑29 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        <  1:2347716‑M1/49‑28 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        <  1:1350292‑M1/49‑28 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        <  1:3070123‑M1/49‑28 (MQ=255)

                             tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  2:3972429‑M1/1‑21 (MQ=255)

                             tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:4297991‑M1/1‑21 (MQ=255)

                             tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:3618765‑M1/1‑21 (MQ=255)

                              gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      >  1:4569097‑M1/1‑20 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  2:1707371‑M1/49‑31 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  2:4420284‑M1/49‑31 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaag                  <  1:145753‑M1/50‑34 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaag                  <  1:2691395‑M1/50‑34 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa                   <  2:4553082‑M1/49‑33 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:2448544‑M1/1‑17 (MQ=255)

                                  cTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 <  1:4745603‑M1/50‑35 (MQ=255)

                                  cTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:1928188‑M1/1‑16 (MQ=255)

                                   tGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 >  2:1427044‑M1/1‑15 (MQ=255)

                                    gTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata               >  2:3010043‑M1/1‑14 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  2:3590026‑M1/1‑13 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  1:4988882‑M1/1‑13 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagat                <  2:423674‑M1/48‑36 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  2:3656478‑M1/1‑11 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  2:2075630‑M1/1‑11 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             <  2:4143798‑M1/49‑39 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             <  1:2218727‑M1/49‑39 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  2:5676499‑M1/1‑10 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  2:2731558‑M1/1‑10 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  1:3966885‑M1/1‑10 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  1:3412324‑M1/1‑10 (MQ=255)

                                          gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         >  1:1162637‑M1/1‑8 (MQ=255)

                                          gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  2:2324647‑M1/50‑43 (MQ=255)

                                          gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:511448‑M1/50‑43 (MQ=255)

                                          gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  2:1324589‑M1/50‑43 (MQ=255)

                                           aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        <  1:436032‑M1/50‑44 (MQ=255)

                                           aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  2:2884636‑M1/1‑7 (MQ=255)

                                           aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  1:5611065‑M1/1‑7 (MQ=255)

                                            aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt       <  2:1187653‑M1/50‑45 (MQ=255)

                                             ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:5246420‑M1/1‑5 (MQ=255)

                                             ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  2:5640496‑M1/50‑46 (MQ=255)

                                             ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:1262621‑M1/50‑46 (MQ=255)

                                             ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:2910764‑M1/50‑46 (MQ=255)

                                              gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  1:877226‑M1/50‑47 (MQ=255)

                                              gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  1:1014607‑M1/50‑47 (MQ=255)

                                              gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  2:2227384‑M1/50‑47 (MQ=255)

                                               tGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttta    <  1:3999892‑M1/50‑48 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  >  1:3324582‑M1/1‑1 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  >  2:1016677‑M1/1‑1 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  <  2:1830281‑M1/50‑50 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  2:4972084‑M1/49‑49 (MQ=255)

TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`