BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	217 [0]	[0] 218	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	208 (1.420)	84/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
*	?	NC_000913	689045 =	0 (0.000)	208 (1.420)	84/96	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region

Only 100 of 218 total aligned reads displayed.

TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTG  >  NC_000913/688998‑689094

tcgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCt                                                  >  2:5427584‑M2/48‑49 (MQ=255)

 cgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCt                                                  >  1:1516710‑M2/47‑48 (MQ=255)

  gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  2:4058754‑M2/46‑50 (MQ=255)

  gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  2:3567348‑M2/46‑50 (MQ=255)

  gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               <  2:1340393‑M2/5‑1 (MQ=255)

  gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  1:1728413‑M2/46‑50 (MQ=255)

  gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  1:2082324‑M2/46‑50 (MQ=255)

  gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  2:2243500‑M2/46‑50 (MQ=255)

   tctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAgg                                              >  2:3869676‑M2/45‑50 (MQ=255)

    ctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAgg                                              >  1:1656879‑M2/44‑49 (MQ=255)

    ctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAgg                                              >  2:1460323‑M2/44‑49 (MQ=255)

      gcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTaa                                           >  2:4938770‑M2/42‑50 (MQ=255)

       cgactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTa                                            <  2:2472633‑M2/8‑1 (MQ=255)

       caactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTaa                                           <  1:2169164‑M2/9‑1 (MQ=255)

       caactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTaa                                           <  1:2589728‑M2/9‑1 (MQ=255)

       caactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTaa                                           <  1:1978653‑M2/9‑1 (MQ=255)

       caactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTa                                            <  1:3638201‑M2/8‑1 (MQ=255)

        aactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACa                                         >  2:590059‑M2/40‑50 (MQ=255)

         actttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAt                                        <  1:5386628‑M2/12‑1 (MQ=255)

          ctttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  2:5066918‑M2/38‑50 (MQ=255)

          ctttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  2:1076558‑M2/38‑50 (MQ=255)

           tttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  1:5231593‑M2/37‑49 (MQ=255)

           tttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  2:4582440‑M2/37‑49 (MQ=255)

            ttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  1:3248741‑M2/36‑48 (MQ=255)

            ttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  2:1509509‑M2/36‑48 (MQ=255)

             tattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAttt                                      <  1:638093‑M2/14‑1 (MQ=255)

             tattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTa                                     <  1:307910‑M2/15‑1 (MQ=255)

             tattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTa                                     <  2:832546‑M2/15‑1 (MQ=255)

              attgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAg                                    <  1:4543821‑M2/16‑1 (MQ=255)

              attgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAg                                    <  1:4848227‑M2/16‑1 (MQ=255)

                 gtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGttt                                 <  2:262968‑M2/19‑1 (MQ=255)

                 gtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGttt                                 <  1:4958402‑M2/19‑1 (MQ=255)

                 gtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGttt                                 <  2:5667845‑M2/19‑1 (MQ=255)

                  tgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTgg                               <  1:3029396‑M2/21‑1 (MQ=255)

                  tgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTg                                <  1:3613277‑M2/20‑1 (MQ=255)

                  tgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTg                                <  2:4537466‑M2/20‑1 (MQ=255)

                   gcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGc                              >  1:2259858‑M2/29‑50 (MQ=255)

                    cagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGc                              >  2:4390695‑M2/28‑49 (MQ=255)

                    cagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCt                             <  2:3369307‑M2/23‑1 (MQ=255)

                     agtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCt                             >  2:5586363‑M2/27‑49 (MQ=255)

                      gtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaa                           <  1:4612851‑M2/25‑1 (MQ=255)

                      gtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaa                           <  1:502603‑M2/25‑1 (MQ=255)

                       tgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaaa                          <  2:5567082‑M2/26‑1 (MQ=255)

                       tgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaaa                          <  1:4915905‑M2/26‑1 (MQ=255)

                       tgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaaa                          >  2:163764‑M2/25‑50 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAAt                         <  1:5884‑M2/27‑1 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAAt                         <  1:1350292‑M2/27‑1 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAAt                         <  1:4449803‑M2/27‑1 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAAt                         <  1:2347716‑M2/27‑1 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATg                        <  2:2815924‑M2/28‑1 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATg                        >  1:456420‑M2/23‑50 (MQ=255)

                         ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCGAAATg                        <  2:1435046‑M2/28‑1 (MQ=255)

                          tgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATg                        >  2:3972429‑M2/22‑49 (MQ=255)

                            tgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      >  1:5082906‑M2/20‑49 (MQ=255)

                            tgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      <  2:1707371‑M2/30‑1 (MQ=255)

                            tgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      <  2:4420284‑M2/30‑1 (MQ=255)

                            tgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      <  1:5016744‑M2/30‑1 (MQ=255)

                              cctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTaaa                    <  2:4553082‑M2/32‑1 (MQ=255)

                              cctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTaaa                    <  1:3203647‑M2/32‑1 (MQ=255)

                              cctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      >  1:2448544‑M2/18‑47 (MQ=255)

                              cctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAg                   <  1:4581970‑M2/33‑1 (MQ=255)

                              cctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAg                   <  1:145753‑M2/33‑1 (MQ=255)

                               ctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      >  1:1928188‑M2/17‑46 (MQ=255)

                               ctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      >  2:1889942‑M2/17‑46 (MQ=255)

                               ctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGa                  <  1:4745603‑M2/34‑1 (MQ=255)

                                tgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGa                  >  1:3428182‑M2/16‑49 (MQ=255)

                                tgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGa                  >  1:4281879‑M2/16‑49 (MQ=255)

                                 gttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGata                >  2:3010043‑M2/15‑50 (MQ=255)

                                 gttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGata                >  1:5280123‑M2/15‑50 (MQ=255)

                                  ttagtgaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGatat               <  2:1218845‑M2/37‑1 (MQ=255)

                                  ttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGatat               >  1:4696989‑M2/14‑50 (MQ=255)

                                    agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAtt              <  2:275960‑M2/38‑1 (MQ=255)

                                    agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAtt              <  1:2218727‑M2/38‑1 (MQ=255)

                                    agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAtt              <  2:4143798‑M2/38‑1 (MQ=255)

                                    agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             >  1:4020360‑M2/12‑50 (MQ=255)

                                    agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             >  2:3656478‑M2/12‑50 (MQ=255)

                                    agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             >  1:434410‑M2/12‑50 (MQ=255)

                                     gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             <  1:713703‑M2/39‑1 (MQ=255)

                                     gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             <  1:2717854‑M2/39‑1 (MQ=255)

                                     gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGc            >  2:5676499‑M2/11‑50 (MQ=255)

                                     gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGc            <  1:3524928‑M2/40‑1 (MQ=255)

                                     gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGc            <  1:3369199‑M2/40‑1 (MQ=255)

                                       gaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTg          >  1:1162637‑M2/9‑50 (MQ=255)

                                       gaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTg          <  2:2324647‑M2/42‑1 (MQ=255)

                                        aaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGt         >  1:5611065‑M2/8‑50 (MQ=255)

                                        aaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGt         >  2:2884636‑M2/8‑50 (MQ=255)

                                          ggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGttt       <  1:1262621‑M2/45‑1 (MQ=255)

                                          ggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGttt       <  1:2910764‑M2/45‑1 (MQ=255)

                                          ggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGttt       <  2:2147455‑M2/45‑1 (MQ=255)

                                          ggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGttt       <  2:5640496‑M2/45‑1 (MQ=255)

                                           gtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGtttt      <  1:877226‑M2/46‑1 (MQ=255)

                                           gtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGtttt      <  1:1014607‑M2/46‑1 (MQ=255)

                                            tgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTa     <  1:3999892‑M2/47‑1 (MQ=255)

                                            tgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTa     <  2:2705491‑M2/47‑1 (MQ=255)

                                              cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt   <  1:4126966‑M2/49‑1 (MQ=255)

                                              cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt   <  2:422689‑M2/49‑1 (MQ=255)

                                              cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt   >  2:1016677‑M2/2‑50 (MQ=255)

                                              cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt   <  2:1830281‑M2/49‑1 (MQ=255)

                                              cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAt    <  2:4972084‑M2/48‑1 (MQ=255)

                                               cttAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAttg  >  2:1548056/1‑50 (MQ=255)

TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTG  >  NC_000913/688998‑689094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`