| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 210 [0] | [0] 208 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 192 (1.340) | 80/94 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
Only 100 of 210 total aligned reads displayed.
AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCA > NC_000913/729315‑729412 | aaaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA > 2:4397324‑M1/1‑50 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:5585759‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc > 2:3641380‑M1/1‑49 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:4664449‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 2:4763016‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 2:5346251‑M1/50‑2 (MQ=255) aaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcg < 2:3136117‑M1/50‑3 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc < 1:395303‑M1/50‑5 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:2828208‑M1/1‑46 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 2:1808177‑M1/50‑6 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 1:3550608‑M1/50‑6 (MQ=255) cAACTGGTGATTTTTATTGGTTGCTGAGTTTTGAATACATTGAAcgtcta > 2:5606296‑M1/1‑44 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta < 1:2238121‑M1/50‑7 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:1025589‑M1/1‑44 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta < 2:2303539‑M1/50‑7 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 2:1925755‑M1/1‑44 (MQ=255) aCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctaca > 2:2993161‑M1/1‑42 (MQ=255) cTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacac < 2:4883786‑M1/50‑10 (MQ=255) cTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacac < 1:3316922‑M1/50‑10 (MQ=255) tGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 2:4735390‑M1/1‑40 (MQ=255) ggTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 1:4233961‑M1/1‑39 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta > 1:1475423‑M1/1‑38 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactt < 2:2203501‑M1/49‑12 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact < 1:5430726‑M1/48‑11 (MQ=255) gTGAGTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacaca < 1:2719973‑M1/48‑11 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 2:1688140‑M1/1‑37 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac < 1:666489‑M1/50‑14 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 2:4298906‑M1/1‑37 (MQ=255) gATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact > 2:4228806‑M1/1‑36 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc < 1:3721873‑M1/50‑16 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcc < 1:2204734‑M1/50‑17 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcc > 1:5169743‑M1/1‑34 (MQ=255) ttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct > 1:3596350‑M1/1‑33 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 2:4316555‑M1/1‑32 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:1254400‑M1/1‑32 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct < 1:1583528‑M1/49‑18 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttacacct < 2:4699294‑M1/49‑18 (MQ=255) ttATTGATTGCTGAGTTTTGAATGCATTGAAcgtctacacttactcctg < 2:2418722‑M1/49‑19 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:2316599‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 2:1526118‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 2:1286081‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:5683061‑M1/1‑31 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta > 1:1073961‑M1/1‑29 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta > 2:111608‑M1/1‑29 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa > 1:1858815‑M1/1‑28 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa > 1:4136904‑M1/1‑28 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac > 2:3426213‑M1/1‑27 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac > 1:2931220‑M1/1‑27 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 1:3002543‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 2:5298991‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 2:4080877‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg < 1:3579985‑M1/50‑26 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:5133440‑M1/49‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:5298587‑M1/49‑25 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgc > 1:751361‑M1/1‑24 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgc > 2:2893848‑M1/1‑24 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgc > 2:174282‑M1/1‑24 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:2807015‑M1/1‑23 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 2:4868298‑M1/49‑28 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:1557631‑M1/1‑22 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 2:1271724‑M1/49‑28 (MQ=255) tGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 2:5024838‑M1/1‑20 (MQ=255) tGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 2:711769‑M1/1‑20 (MQ=255) tGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:3091432‑M1/1‑20 (MQ=255) gAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 2:4537567‑M1/1‑19 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:1802204‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:798280‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:1883450‑M1/1‑18 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag < 2:3186711‑M1/48‑31 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag < 2:3482560‑M1/48‑31 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagc < 1:2409645‑M1/50‑35 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:384050‑M1/1‑16 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 2:366865‑M1/1‑16 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:1659265‑M1/1‑15 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 2:1784429‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:433847‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:271725‑M1/1‑13 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 1:4812735‑M1/1‑12 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 2:1668361‑M1/1‑12 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagta < 1:4504832‑M1/49‑39 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 2:3609066‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:4832730‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat < 2:5560751‑M1/50‑41 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagaagtaat < 1:4881384‑M1/50‑41 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg < 1:942278‑M1/50‑42 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:4014768‑M1/1‑9 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgctcaggatcagtaatg > 2:2064573‑M1/1‑8 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg > 2:4907510‑M1/1‑8 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaa > 1:4773313‑M1/1‑7 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatga < 2:2783786‑M1/49‑43 (MQ=255) aTTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaat < 2:445152‑M1/50‑45 (MQ=255) aTTGAAcgtctacacttacgcctgtaaaccgctcaggagcagtaatgaat < 1:849940‑M1/50‑45 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc < 1:3430206‑M1/50‑46 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc < 2:553250‑M1/50‑46 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 2:3284188‑M1/1‑3 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctac < 2:249213‑M1/50‑49 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:2554677‑M1/1‑2 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:5036683‑M1/1‑2 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta < 2:1027746‑M1/49‑48 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctac > 1:2126911‑M1/1‑1 (MQ=255) | AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCA > NC_000913/729315‑729412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |