BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,090,347	Δ708 bp	coding (1‑708/708 nt)	endA →	DNA‑specific endonuclease I

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3090347	3091054	708	139 [0]	[0] 142	endA	DNA‑specific endonuclease I

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3090346	0 (0.000)	137 (0.920)	71/98	0.0	100%	intergenic (+94/‑1)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
*	?	NC_000913	3091055 =	0 (0.000)	137 (0.920)	71/98	0.0	100%	intergenic (+1/‑79)	endA/rsmE	DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase

Only 100 of 139 total aligned reads displayed.

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT  >  NC_000913/3090296‑3090395

aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                   >  1:555346/1‑50 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                   <  2:3340043/49‑1 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc                                                  >  1:370858‑M1/1‑49 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc                                                  <  2:4622908‑M1/50‑2 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct                                                <  1:531363‑M1/50‑4 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                                 >  1:3789538‑M1/1‑47 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                               >  2:3960345‑M1/1‑46 (MQ=255)

    aaaCAGCTTTCGCTAAGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                               <  2:3350892‑M1/50‑5 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                              <  2:1339706‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                              <  1:5124512‑M1/50‑6 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                             <  1:3257777‑M1/50‑7 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                             <  2:3278858‑M1/50‑7 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                            <  1:1662815‑M1/50‑8 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                            >  2:4060622‑M1/1‑43 (MQ=255)

        aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                            >  1:3180606‑M1/1‑42 (MQ=255)

          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                                         >  2:2315248‑M1/1‑40 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        >  2:1759079‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        >  1:4716113‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        >  1:3167911‑M1/1‑39 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                                      >  2:4260234‑M1/1‑37 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                                      >  2:298834‑M1/1‑37 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                       <  2:5688786‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                       <  1:390149‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                       <  1:3876284‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                       <  2:3478700‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        <  2:4831103‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        <  2:2200956‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        <  2:3665426‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                        <  1:2319604‑M1/48‑12 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                                      >  1:3253595‑M1/1‑36 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                                      <  1:2429338‑M1/49‑14 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                    >  2:5321865‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                    <  1:3568706‑M1/50‑16 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                    <  2:5622295‑M1/50‑16 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                    <  2:1876645‑M1/50‑16 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                                   <  1:1133272‑M1/50‑17 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                                   <  1:4440667‑M1/50‑17 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                                   >  1:930610‑M1/1‑34 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                                  >  1:4794230‑M1/1‑33 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                                  >  1:2258717‑M1/1‑33 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                                  >  2:2615873‑M1/1‑33 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                                  <  2:3020698‑M1/48‑18 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                               >  2:3837494‑M1/1‑30 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                               <  1:5420618‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                               >  1:3075149‑M1/1‑30 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                               <  1:2176641‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                               <  1:1883063‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcct                               <  2:818364‑M1/50‑21 (MQ=255)

                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                              <  2:3645585‑M1/50‑22 (MQ=255)

                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                              <  2:530817‑M1/50‑22 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                             >  2:4092235‑M1/1‑28 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                             >  1:312371‑M1/1‑28 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                            >  1:4402134‑M1/1‑27 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                             <  2:3303210‑M1/49‑23 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                           <  2:3630582‑M1/50‑25 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                           >  1:5525720‑M1/1‑26 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                            <  1:1261576‑M1/49‑24 (MQ=255)

                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                          >  1:5699814‑M1/1‑25 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                          >  2:1561932‑M1/1‑24 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                          >  2:1861735‑M1/1‑24 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                          >  1:3142069‑M1/1‑24 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta                        <  2:4081651‑M1/50‑28 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                          <  2:1176794‑M1/48‑26 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                          <  1:4524333‑M1/48‑26 (MQ=255)

                           gCTCGTTGTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                         <  2:1120137‑M1/49‑27 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                       <  1:3971591‑M1/50‑29 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                       <  2:5226070‑M1/50‑29 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                       >  1:2679297‑M1/1‑22 (MQ=255)

                             tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac                      >  1:2475205‑M1/1‑21 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                    >  1:789785‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                    >  2:1981881‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc                     <  1:1980227‑M1/49‑31 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac                      <  2:1551957‑M1/48‑30 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac                      <  1:3008901‑M1/48‑30 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                   <  2:5058760‑M1/50‑33 (MQ=255)

                                 tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                   >  1:5346742‑M1/1‑17 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta                 >  1:2849065‑M1/1‑16 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta                 >  1:1866004‑M1/1‑16 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct                  <  1:4314594‑M1/49‑34 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc               >  2:1442364‑M1/1‑14 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac                <  2:3333368‑M1/49‑36 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc              >  1:2624399‑M1/1‑13 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc              <  2:5071057‑M1/50‑38 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc              >  2:2806598‑M1/1‑13 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc               <  1:3365967‑M1/49‑37 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc               <  2:5554640‑M1/49‑37 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc               <  1:1592089‑M1/49‑37 (MQ=255)

                                      cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc              >  1:4978906‑M1/1‑12 (MQ=255)

                                      cacGGAG‑AAGTGactacactagcgggattctttttgttaacccctacccc             <  1:3028711‑M1/50‑39 (MQ=255)

                                       acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca            <  2:902642‑M1/50‑40 (MQ=255)

                                            agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg        >  2:5617527‑M1/3‑7 (MQ=255)

                                            agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg        >  2:257080‑M1/3‑7 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta      >  1:307211‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta      >  1:4646720‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta      <  1:4703020‑M1/50‑46 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta      >  2:3668231‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta      >  2:1372914‑M1/1‑5 (MQ=255)

                                               aGTGcctacactagcgggattctttttgttaacccctaccccacgcgta      >  2:701888‑M1/1‑4 (MQ=255)

                                                  gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac  >  1:2200130‑M1/1‑1 (MQ=255)

                                                  gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac  >  1:3455301‑M1/1‑1 (MQ=255)

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT  >  NC_000913/3090296‑3090395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`